Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA17_RS32390 Genome accession   NZ_CP108115
Coordinates   7097022..7097642 (-) Length   206 a.a.
NCBI ID   WP_053723643.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7092022..7102642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS32370 (OHA17_32310) - 7092455..7093684 (-) 1230 WP_398881871.1 DUF349 domain-containing protein -
  OHA17_RS32375 (OHA17_32315) - 7093888..7094670 (-) 783 WP_406509441.1 peptidylprolyl isomerase -
  OHA17_RS32380 (OHA17_32320) - 7094823..7095533 (+) 711 WP_406509442.1 MBL fold metallo-hydrolase -
  OHA17_RS32385 (OHA17_32325) hisS 7095548..7096810 (+) 1263 WP_406509443.1 histidine--tRNA ligase -
  OHA17_RS32390 (OHA17_32330) vraR 7097022..7097642 (-) 621 WP_053723643.1 response regulator transcription factor Regulator
  OHA17_RS32395 (OHA17_32335) - 7097639..7098898 (-) 1260 WP_406509444.1 sensor histidine kinase -
  OHA17_RS32400 (OHA17_32340) - 7098856..7099701 (-) 846 WP_406509445.1 ABC transporter permease -
  OHA17_RS32405 (OHA17_32345) - 7099698..7100567 (-) 870 WP_406509446.1 ABC transporter ATP-binding protein -
  OHA17_RS32410 (OHA17_32350) - 7100715..7101353 (+) 639 WP_406509447.1 vitamin K epoxide reductase family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21993.50 Da        Isoelectric Point: 5.8702

>NTDB_id=654047 OHA17_RS32390 WP_053723643.1 7097022..7097642(-) (vraR) [Streptomyces sp. NBC_00212]
MIRILLADDHPVVREGLRGMLAAEPDLEVVADAANGPQAEALCAELRPDIVLMDLRMPGGDGVESIGRLTASGLPCRVIV
LTTYETDRDILRAVEAGAAGYLLKDLARGELAQAVRAAARGETVLAPSVAGRLVDQLRARPERPRLSEREVSVLRLVAEG
CTNAEIGRRLFVAESTVKTHVVRIFGKLGVDDRTAAVTRAMGLGLI

Nucleotide


Download         Length: 621 bp        

>NTDB_id=654047 OHA17_RS32390 WP_053723643.1 7097022..7097642(-) (vraR) [Streptomyces sp. NBC_00212]
GTGATCCGCATCCTGCTCGCCGACGACCATCCGGTGGTACGGGAGGGGCTGCGCGGGATGCTCGCGGCCGAGCCCGACCT
GGAAGTGGTGGCCGACGCCGCCAACGGCCCGCAGGCCGAGGCGCTGTGCGCGGAGCTCCGGCCGGACATCGTGCTGATGG
ATCTGCGGATGCCCGGCGGCGACGGGGTCGAGTCGATCGGCCGCCTGACCGCCTCGGGGCTGCCGTGCCGGGTGATCGTC
CTGACGACGTACGAAACGGACCGGGACATTCTGCGGGCCGTGGAGGCGGGGGCCGCGGGGTATCTGCTCAAGGACCTCGC
GCGGGGGGAGCTGGCGCAGGCGGTGCGGGCCGCTGCGCGGGGCGAGACGGTTCTGGCGCCCTCCGTCGCGGGGCGCCTCG
TCGACCAGCTCCGTGCTCGGCCGGAGCGGCCGCGGCTGTCCGAGCGGGAGGTGTCCGTGCTGCGGCTGGTGGCCGAGGGG
TGCACGAATGCCGAGATCGGGCGGCGGTTGTTCGTCGCGGAGTCGACGGTGAAGACGCATGTGGTGCGGATCTTCGGGAA
GTTGGGGGTGGACGACCGCACGGCGGCGGTTACGCGGGCGATGGGGTTGGGGCTGATTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(146-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.806

100

0.398
  degU Bacillus subtilis subsp. subtilis str. 168

36.323

100

0.393
  letA Legionella pneumophila str. Paris

36.364

100

0.369
  letA Legionella pneumophila strain ERS1305867

36.364

100

0.369