Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | H7R12_RS10355 | Genome accession | NZ_AP022044 |
| Coordinates | 2160084..2161094 (+) | Length | 336 a.a. |
| NCBI ID | WP_000568520.1 | Uniprot ID | - |
| Organism | Escherichia coli strain WP4-S17-ESBL-03 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2155084..2166094
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7R12_RS10330 (WP4S17E03_20070) | nudB | 2156806..2157258 (+) | 453 | WP_077249130.1 | dihydroneopterin triphosphate diphosphatase | - |
| H7R12_RS10335 (WP4S17E03_20080) | yebC | 2157287..2158027 (+) | 741 | WP_000907234.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| H7R12_RS10340 (WP4S17E03_20090) | ruvC | 2158062..2158583 (+) | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| H7R12_RS10345 (WP4S17E03_20100) | yebB | 2158585..2159187 (-) | 603 | WP_001024911.1 | YebB family permuted papain-like enzyme | - |
| H7R12_RS25755 | yobI | 2159262..2159324 (+) | 63 | WP_169057927.1 | stress response small protein YobI | - |
| H7R12_RS10350 (WP4S17E03_20110) | ruvA | 2159464..2160075 (+) | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| H7R12_RS10355 (WP4S17E03_20120) | ruvB | 2160084..2161094 (+) | 1011 | WP_000568520.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| H7R12_RS10360 | - | 2161204..2162538 (+) | 1335 | Protein_2047 | IS3 family transposase | - |
| H7R12_RS10365 (WP4S17E03_20150) | znuB | 2162732..2163517 (-) | 786 | WP_000571478.1 | zinc ABC transporter permease subunit ZnuB | - |
| H7R12_RS10370 (WP4S17E03_20160) | znuC | 2163514..2164269 (-) | 756 | WP_000202996.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| H7R12_RS10375 (WP4S17E03_20170) | znuA | 2164348..2165280 (+) | 933 | WP_001347089.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37163.73 Da Isoelectric Point: 4.7818
>NTDB_id=65389 H7R12_RS10355 WP_000568520.1 2160084..2161094(+) (ruvB) [Escherichia coli strain WP4-S17-ESBL-03]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMS
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMS
Nucleotide
Download Length: 1011 bp
>NTDB_id=65389 H7R12_RS10355 WP_000568520.1 2160084..2161094(+) (ruvB) [Escherichia coli strain WP4-S17-ESBL-03]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTATTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAATATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCAATGCTCACTAACCTTGAACCACA
CGATGTACTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGCGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGTCGTAA
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTATTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAATATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCAATGCTCACTAACCTTGAACCACA
CGATGTACTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGCGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGTCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
60.486 |
97.917 |
0.592 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.934 |
94.94 |
0.56 |
| ruvB | Streptococcus pneumoniae R6 |
58.934 |
94.94 |
0.56 |
| ruvB | Streptococcus pneumoniae D39 |
58.934 |
94.94 |
0.56 |
| ruvB | Synechocystis sp. PCC 6803 |
53.251 |
96.131 |
0.512 |
| ruvB | Helicobacter pylori 26695 |
52.038 |
94.94 |
0.494 |