Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5M76_RS18255 Genome accession   NZ_CP091833
Coordinates   4158045..4158752 (-) Length   235 a.a.
NCBI ID   WP_099457435.1    Uniprot ID   -
Organism   Shewanella xiamenensis strain HD6452     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4153045..4163752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5M76_RS18245 (K5M76_18210) - 4154115..4156946 (-) 2832 WP_088586659.1 pitrilysin family protein -
  K5M76_RS18250 (K5M76_18215) - 4157231..4157824 (-) 594 WP_047536355.1 hypothetical protein -
  K5M76_RS18255 (K5M76_18220) ssb 4158045..4158752 (-) 708 WP_099457435.1 single-stranded DNA-binding protein Machinery gene
  K5M76_RS18260 (K5M76_18225) - 4158861..4160228 (-) 1368 WP_037422579.1 MFS transporter -
  K5M76_RS18265 (K5M76_18230) uvrA 4160637..4163489 (+) 2853 WP_055647927.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 25468.99 Da        Isoelectric Point: 5.7610

>NTDB_id=653813 K5M76_RS18255 WP_099457435.1 4158045..4158752(-) (ssb) [Shewanella xiamenensis strain HD6452]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGGRNQGQGQGAPMGGMPQNGGYQSAPQQAAPAQNQYAPAPQAAPAYQA
PVPQPQSGYNQQPAQQSYGQQQAQPHAQPQQGGYAPKPAAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 708 bp        

>NTDB_id=653813 K5M76_RS18255 WP_099457435.1 4158045..4158752(-) (ssb) [Shewanella xiamenensis strain HD6452]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTATATGCCAAACGG
TAACGCAGTCGCAAACATCACCGTTGCGACCAGCGAATCGTGGAAAGACCAACAAGGTCAACAGCAAGAACGTACTGAAT
GGCACCGTGTGGTTCTGTTTGGCAAGTTGGCTGAAATTACGGGTGAGTACCTGCGTAAAGGTTCACAGGTTTACCTCGAA
GGTAAATTGCAAACGCGTAAGTGGAAAGATCAAAGCGGTCAAGATCGTTACAGCACTGAAGTGGTTATCGACCAAAGCGG
TAGCATGCAAATGTTAGGCGGCCGTAACCAAGGTCAAGGCCAAGGTGCCCCAATGGGTGGTATGCCACAAAACGGCGGTT
ACCAATCAGCCCCACAACAAGCTGCTCCTGCGCAAAATCAATATGCGCCAGCACCGCAAGCGGCTCCTGCTTACCAAGCT
CCAGTGCCACAACCTCAATCTGGCTACAATCAGCAGCCAGCTCAGCAAAGCTATGGTCAGCAACAGGCGCAGCCTCACGC
TCAGCCACAGCAGGGCGGTTATGCGCCTAAACCGGCAGCTCCAGCGTATCAAGCGCCAGCTGCACCTGCGCAGCGTCCAG
CGCCACAGCCACAACAAAACTTCACTCCAGATTTGGATGATGGTTGGGACGACGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

64.773

74.894

0.485
  ssb Glaesserella parasuis strain SC1401

43.83

100

0.438
  ssb Neisseria gonorrhoeae MS11

41.026

99.574

0.409
  ssb Neisseria meningitidis MC58

50.898

71.064

0.362