Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L7D45_RS04970 Genome accession   NZ_CP091783
Coordinates   1037638..1038159 (+) Length   173 a.a.
NCBI ID   WP_079211933.1    Uniprot ID   -
Organism   Brucella pseudogrignonensis strain ESL2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1032638..1043159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L7D45_RS04955 (L7D45_04955) - 1032672..1032947 (+) 276 WP_007875106.1 HU family DNA-binding protein -
  L7D45_RS04960 (L7D45_04960) - 1033056..1033829 (+) 774 WP_200635164.1 phosphodiester glycosidase family protein -
  L7D45_RS04965 (L7D45_04965) uvrA 1033859..1036783 (-) 2925 WP_112806556.1 excinuclease ABC subunit UvrA -
  L7D45_RS04970 (L7D45_04970) ssb 1037638..1038159 (+) 522 WP_079211933.1 single-stranded DNA-binding protein Machinery gene
  L7D45_RS04975 (L7D45_04975) arsC 1038389..1038802 (-) 414 WP_113498454.1 arsenate reductase (glutaredoxin) -
  L7D45_RS04980 (L7D45_04980) phnF 1039057..1039827 (-) 771 WP_039859800.1 phosphonate metabolism transcriptional regulator PhnF -
  L7D45_RS04985 (L7D45_04985) phnG 1039960..1040487 (+) 528 WP_079211931.1 phosphonate C-P lyase system protein PhnG -
  L7D45_RS04990 (L7D45_04990) phnH 1040487..1041158 (+) 672 WP_151561780.1 phosphonate C-P lyase system protein PhnH -
  L7D45_RS04995 (L7D45_04995) - 1041162..1042361 (+) 1200 WP_200635166.1 carbon-phosphorus lyase complex subunit PhnI -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18645.38 Da        Isoelectric Point: 5.3476

>NTDB_id=653644 L7D45_RS04970 WP_079211933.1 1037638..1038159(+) (ssb) [Brucella pseudogrignonensis strain ESL2]
MAGSVNKVILVGNLGADPEIRRLNSGDQIANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDGRGEGGGEGRSFGGGGGGNRNQMSDYSGGGGDFGSSGPSNQGGGG
GGFSRDLDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=653644 L7D45_RS04970 WP_079211933.1 1037638..1038159(+) (ssb) [Brucella pseudogrignonensis strain ESL2]
ATGGCTGGTAGCGTCAACAAAGTCATTCTGGTCGGCAATCTTGGTGCCGATCCTGAAATTCGTCGCCTCAATTCAGGTGA
TCAGATCGCCAATCTGCGCATTGCGACTTCGGAAAGCTGGCGCGACCGTCAGACCGGCGAACGCAAGGATCGTACCGAAT
GGCACAGCGTTGTCATTTTCAACGAAAATCTTGCCAAGGTTGCCGAGCAGTATCTGAAAAAGGGTGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGACCAGAACGGCAACGACCGCTACAGCACCGAAATCGTGTTGCAGAAGTT
CCGCGGGGAGCTTCAGATGCTCGATGGCCGTGGTGAAGGCGGCGGCGAAGGTCGCTCATTCGGCGGTGGTGGCGGTGGCA
ATCGCAACCAGATGTCGGATTATTCCGGCGGCGGCGGTGATTTCGGTTCCTCCGGCCCATCCAATCAGGGTGGCGGCGGC
GGTGGTTTCTCCCGCGATCTCGACGACGAAATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.187

100

0.538
  ssb Vibrio cholerae strain A1552

48.588

100

0.497
  ssb Neisseria meningitidis MC58

38.889

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.333

100

0.399