Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SUTH_RS14540 Genome accession   NZ_AP012547
Coordinates   3033430..3033897 (-) Length   155 a.a.
NCBI ID   WP_041100260.1    Uniprot ID   W0SH75
Organism   Sulfuritalea hydrogenivorans sk43H strain DSM 22779     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3028430..3038897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUTH_RS14540 (SUTH_02920) ssb 3033430..3033897 (-) 468 WP_041100260.1 single-stranded DNA-binding protein Machinery gene
  SUTH_RS14545 (SUTH_02921) - 3033920..3035131 (-) 1212 WP_041100262.1 MFS transporter -
  SUTH_RS14550 (SUTH_02922) uvrA 3035266..3038151 (+) 2886 WP_052473673.1 excinuclease ABC subunit UvrA -
  SUTH_RS14555 (SUTH_02923) - 3038292..3038486 (+) 195 WP_041100264.1 hypothetical protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16667.58 Da        Isoelectric Point: 5.9663

>NTDB_id=65359 SUTH_RS14540 WP_041100260.1 3033430..3033897(-) (ssb) [Sulfuritalea hydrogenivorans sk43H strain DSM 22779]
MASVNKVIIVGNLGRDPEVRYTPNGDSITNVTIATTDTWKDKATGEKKEATEWHRVVFFGKLAEIAGQYLKKGRQVYVEG
ALRTRKWTDKEGQERYTTEIVANEMKMLGSREGMSDAPPRESGGGAGAGGGGSRPAAAAAPAGGNFNDFEDDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=65359 SUTH_RS14540 WP_041100260.1 3033430..3033897(-) (ssb) [Sulfuritalea hydrogenivorans sk43H strain DSM 22779]
ATGGCGTCAGTCAACAAGGTCATCATCGTCGGCAATCTGGGCCGCGATCCGGAAGTGCGCTACACGCCCAACGGTGATTC
GATCACCAATGTCACCATCGCCACCACCGACACCTGGAAGGACAAGGCCACCGGCGAGAAGAAGGAAGCCACCGAATGGC
ATCGCGTGGTGTTCTTCGGCAAGCTGGCCGAGATTGCCGGCCAGTACCTGAAAAAGGGTCGGCAGGTCTACGTCGAAGGT
GCCCTGCGCACCCGCAAATGGACCGACAAGGAAGGCCAGGAACGCTACACGACCGAGATCGTCGCCAACGAAATGAAAAT
GCTCGGCTCGCGCGAGGGCATGAGCGACGCGCCGCCGCGCGAGAGCGGCGGCGGTGCTGGTGCCGGCGGCGGTGGCAGTC
GTCCCGCTGCCGCTGCGGCGCCCGCCGGCGGCAACTTCAACGATTTCGAGGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0SH75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.581
  ssb Glaesserella parasuis strain SC1401

47.778

100

0.555
  ssb Neisseria meningitidis MC58

47.126

100

0.529
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.523

Multiple sequence alignment