Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG718_RS51000 Genome accession   NZ_CP108081
Coordinates   11495060..11495692 (+) Length   210 a.a.
NCBI ID   WP_328847487.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 11490060..11500692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS50985 (OG718_50985) - 11491257..11492504 (-) 1248 WP_328847485.1 DUF6236 family protein -
  OG718_RS50990 (OG718_50995) - 11492857..11493645 (-) 789 WP_143643196.1 class I SAM-dependent methyltransferase -
  OG718_RS50995 (OG718_51000) - 11493816..11495063 (+) 1248 WP_328847486.1 sensor histidine kinase -
  OG718_RS51000 (OG718_51005) vraR 11495060..11495692 (+) 633 WP_328847487.1 response regulator transcription factor Regulator
  OG718_RS51005 (OG718_51010) - 11495945..11497141 (+) 1197 WP_328847489.1 RNA-guided endonuclease TnpB family protein -
  OG718_RS51010 (OG718_51015) - 11497276..11498907 (+) 1632 WP_328845964.1 IS1182 family transposase -
  OG718_RS51015 (OG718_51020) - 11499375..11500238 (+) 864 WP_328847490.1 DUF4132 domain-containing protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22259.62 Da        Isoelectric Point: 6.6451

>NTDB_id=653071 OG718_RS51000 WP_328847487.1 11495060..11495692(+) (vraR) [Streptomyces sp. NBC_00258]
MTPVRLLLCDDHAVVRAGLRALLSSADGIEVVGEAATGEEALAMAARLSPDVVLMDLQLDGGMDGVTATRRLTSECGGTG
PRVLVLTMFDTDADITRAIEAGATGYLLKAEHPDELFTAIRHAASGRTALSAPVADRLMTRLRSPSPTLSPREHEILGQL
ARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVAKERRLLE

Nucleotide


Download         Length: 633 bp        

>NTDB_id=653071 OG718_RS51000 WP_328847487.1 11495060..11495692(+) (vraR) [Streptomyces sp. NBC_00258]
GTGACGCCCGTCCGACTGTTGTTGTGCGACGATCACGCCGTGGTACGTGCGGGGCTGCGCGCCCTCCTGTCCAGCGCCGA
CGGCATCGAAGTGGTCGGTGAGGCGGCCACCGGCGAGGAGGCACTCGCGATGGCTGCCCGGCTGAGTCCGGACGTTGTGC
TGATGGACCTCCAGCTCGACGGCGGAATGGACGGTGTGACAGCCACCCGTCGCCTGACCTCCGAGTGTGGTGGGACGGGC
CCCCGGGTCCTGGTGCTCACGATGTTCGACACCGACGCCGACATCACCCGGGCCATCGAGGCGGGTGCCACCGGCTATCT
GCTCAAGGCCGAACACCCTGATGAACTGTTCACGGCGATCCGCCACGCGGCGTCCGGTCGCACGGCTCTGTCGGCCCCGG
TGGCCGACCGGTTGATGACCCGGCTGCGCAGCCCGAGTCCCACCCTGTCCCCGCGCGAGCACGAGATCCTCGGACAACTC
GCCCGTGGCTTGGGCAACCGCGAGATCGCCCGAGCCCTGTTCATCAGCGAGGCGACGGTCAAGACCCATCTCGGGCGGAT
CTACGGCAAGTTGGGGGTGGAGACGCGGGCGGGGGCCGTGGCGGTCGCCAAGGAGAGGCGGCTGCTGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-121)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.095

100

0.381
  degU Bacillus subtilis subsp. subtilis str. 168

33.913

100

0.371
  letA Legionella pneumophila str. Paris

35.514

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.514

100

0.362