Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BEST7003_RS20135 Genome accession   NZ_AP012496
Coordinates   4026322..4026840 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis BEST7003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4021322..4031840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEST7003_RS20105 (BEST7003_3988) yyaJ 4021825..4023180 (+) 1356 WP_020862415.1 MFS transporter -
  BEST7003_RS20110 (BEST7003_3989) maa 4023214..4023768 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  BEST7003_RS20115 (BEST7003_3990) yyaH 4023786..4024166 (-) 381 WP_003244460.1 VOC family protein -
  BEST7003_RS20120 (BEST7003_3991) ccpB 4024222..4025157 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  BEST7003_RS20125 (BEST7003_3992) xth 4025216..4025974 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  BEST7003_RS20130 (BEST7003_3993) rpsR 4026039..4026278 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  BEST7003_RS20135 (BEST7003_3994) ssbA 4026322..4026840 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  BEST7003_RS20140 (BEST7003_3995) rpsF 4026881..4027168 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  BEST7003_RS20145 (BEST7003_3996) ychF 4027279..4028379 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  BEST7003_RS20150 (BEST7003_3997) yyaE 4028506..4030509 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  BEST7003_RS20155 (BEST7003_3998) yyzM 4030560..4030766 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=65287 BEST7003_RS20135 WP_003219228.1 4026322..4026840(-) (ssbA) [Bacillus subtilis BEST7003]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=65287 BEST7003_RS20135 WP_003219228.1 4026322..4026840(-) (ssbA) [Bacillus subtilis BEST7003]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment