Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   BEST7003_RS17380 Genome accession   NZ_AP012496
Coordinates   3472906..3474063 (-) Length   385 a.a.
NCBI ID   WP_020862395.1    Uniprot ID   -
Organism   Bacillus subtilis BEST7003     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3467906..3479063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEST7003_RS17350 (BEST7003_3432) yvyF 3468159..3468578 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  BEST7003_RS17355 (BEST7003_3433) comFC 3468652..3469374 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  BEST7003_RS17360 (BEST7003_3434) comFB 3469338..3469634 (-) 297 WP_003227989.1 late competence protein ComFB -
  BEST7003_RS17365 (BEST7003_3435) comFA 3469694..3471085 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  BEST7003_RS17370 (BEST7003_3436) fakBA 3471191..3472036 (-) 846 WP_003244125.1 DegV family protein -
  BEST7003_RS17375 (BEST7003_3437) degU 3472134..3472823 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BEST7003_RS17380 (BEST7003_3438) degS 3472906..3474063 (-) 1158 WP_020862395.1 two-component sensor histidine kinase DegS Regulator
  BEST7003_RS17385 (BEST7003_3439) yvyE 3474280..3474933 (+) 654 WP_003227979.1 YigZ family protein -
  BEST7003_RS17390 (BEST7003_3440) tagV 3474933..3476108 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  BEST7003_RS17395 (BEST7003_3441) tagO 3476181..3477257 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  BEST7003_RS17400 (BEST7003_3442) tuaH 3477402..3478595 (-) 1194 WP_003243252.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44904.71 Da        Isoelectric Point: 6.0602

>NTDB_id=65279 BEST7003_RS17380 WP_020862395.1 3472906..3474063(-) (degS) [Bacillus subtilis BEST7003]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTCHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=65279 BEST7003_RS17380 WP_020862395.1 3472906..3474063(-) (degS) [Bacillus subtilis BEST7003]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTTGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTCCGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

99.74

100

0.997

Multiple sequence alignment