Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BEST7003_RS17355 Genome accession   NZ_AP012496
Coordinates   3468652..3469374 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis BEST7003     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3463652..3474374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEST7003_RS17320 (BEST7003_3426) fliW 3463791..3464222 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  BEST7003_RS17325 (BEST7003_3427) yviE 3464243..3464818 (-) 576 WP_003243053.1 DUF6470 family protein -
  BEST7003_RS17330 (BEST7003_3428) flgL 3464865..3465761 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  BEST7003_RS17335 (BEST7003_3429) flgK 3465772..3467295 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  BEST7003_RS17340 (BEST7003_3430) flgN 3467314..3467796 (-) 483 WP_003227999.1 flagellar protein FlgN -
  BEST7003_RS17345 (BEST7003_3431) flgM 3467812..3468078 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  BEST7003_RS17350 (BEST7003_3432) yvyF 3468159..3468578 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  BEST7003_RS17355 (BEST7003_3433) comFC 3468652..3469374 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  BEST7003_RS17360 (BEST7003_3434) comFB 3469338..3469634 (-) 297 WP_003227989.1 late competence protein ComFB -
  BEST7003_RS17365 (BEST7003_3435) comFA 3469694..3471085 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  BEST7003_RS17370 (BEST7003_3436) fakBA 3471191..3472036 (-) 846 WP_003244125.1 DegV family protein -
  BEST7003_RS17375 (BEST7003_3437) degU 3472134..3472823 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BEST7003_RS17380 (BEST7003_3438) degS 3472906..3474063 (-) 1158 WP_020862395.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=65276 BEST7003_RS17355 WP_003227991.1 3468652..3469374(-) (comFC) [Bacillus subtilis BEST7003]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=65276 BEST7003_RS17355 WP_003227991.1 3468652..3469374(-) (comFC) [Bacillus subtilis BEST7003]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment