Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BEST7003_RS17375 Genome accession   NZ_AP012496
Coordinates   3472134..3472823 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis BEST7003     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3467134..3477823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEST7003_RS17340 (BEST7003_3430) flgN 3467314..3467796 (-) 483 WP_003227999.1 flagellar protein FlgN -
  BEST7003_RS17345 (BEST7003_3431) flgM 3467812..3468078 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  BEST7003_RS17350 (BEST7003_3432) yvyF 3468159..3468578 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  BEST7003_RS17355 (BEST7003_3433) comFC 3468652..3469374 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  BEST7003_RS17360 (BEST7003_3434) comFB 3469338..3469634 (-) 297 WP_003227989.1 late competence protein ComFB -
  BEST7003_RS17365 (BEST7003_3435) comFA 3469694..3471085 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  BEST7003_RS17370 (BEST7003_3436) fakBA 3471191..3472036 (-) 846 WP_003244125.1 DegV family protein -
  BEST7003_RS17375 (BEST7003_3437) degU 3472134..3472823 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BEST7003_RS17380 (BEST7003_3438) degS 3472906..3474063 (-) 1158 WP_020862395.1 two-component sensor histidine kinase DegS Regulator
  BEST7003_RS17385 (BEST7003_3439) yvyE 3474280..3474933 (+) 654 WP_003227979.1 YigZ family protein -
  BEST7003_RS17390 (BEST7003_3440) tagV 3474933..3476108 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  BEST7003_RS17395 (BEST7003_3441) tagO 3476181..3477257 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=65278 BEST7003_RS17375 WP_003219701.1 3472134..3472823(-) (degU) [Bacillus subtilis BEST7003]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=65278 BEST7003_RS17375 WP_003219701.1 3472134..3472823(-) (degU) [Bacillus subtilis BEST7003]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment