Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H7R01_RS01925 Genome accession   NZ_AP022036
Coordinates   422890..423357 (-) Length   155 a.a.
NCBI ID   WP_000340167.1    Uniprot ID   A7ZSL1
Organism   Escherichia coli strain WP3-S18-ESBL-09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417890..428357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R01_RS01900 (WP3S18E09_03810) rpsG 418031..418501 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  H7R01_RS01905 (WP3S18E09_03820) fusA 418598..420712 (+) 2115 WP_000124700.1 elongation factor G -
  H7R01_RS01910 (WP3S18E09_03830) tuf 420783..421967 (+) 1185 WP_000031783.1 elongation factor Tu -
  H7R01_RS01915 (WP3S18E09_03840) bfd 422150..422344 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  H7R01_RS01920 (WP3S18E09_03850) bfr 422417..422893 (+) 477 WP_000675515.1 bacterioferritin -
  H7R01_RS01925 (WP3S18E09_03860) pilD 422890..423357 (-) 468 WP_000340167.1 A24 family peptidase Machinery gene
  H7R01_RS01930 (WP3S18E09_03870) rpsJ 423736..424047 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  H7R01_RS01935 (WP3S18E09_03880) rplC 424080..424709 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  H7R01_RS01940 (WP3S18E09_03890) rplD 424720..425325 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  H7R01_RS01945 (WP3S18E09_03900) rplW 425322..425624 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  H7R01_RS01950 (WP3S18E09_03910) rplB 425642..426463 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  H7R01_RS01955 (WP3S18E09_03920) rpsS 426480..426758 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  H7R01_RS01960 (WP3S18E09_03930) rplV 426773..427105 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  H7R01_RS01965 (WP3S18E09_03940) rpsC 427123..427824 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  H7R01_RS01970 (WP3S18E09_03950) rplP 427837..428247 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16984.17 Da        Isoelectric Point: 8.0293

>NTDB_id=65277 H7R01_RS01925 WP_000340167.1 422890..423357(-) (pilD) [Escherichia coli strain WP3-S18-ESBL-09]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDCLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=65277 H7R01_RS01925 WP_000340167.1 422890..423357(-) (pilD) [Escherichia coli strain WP3-S18-ESBL-09]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACTGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZSL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment