Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BEST7003_RS05480 Genome accession   NZ_AP012496
Coordinates   1092344..1092922 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis BEST7003     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087344..1097922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEST7003_RS05460 (BEST7003_1021) hemAT 1087855..1089153 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  BEST7003_RS05465 (BEST7003_1022) comW 1089292..1090821 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  BEST7003_RS05470 (BEST7003_1023) yhxC 1090933..1091790 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  BEST7003_RS05475 (BEST7003_1024) yhzC 1091818..1092051 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  BEST7003_RS05480 (BEST7003_1025) comK 1092344..1092922 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  BEST7003_RS05485 (BEST7003_1026) yhxD 1092969..1093868 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  BEST7003_RS05490 (BEST7003_1027) yhjA 1094085..1094354 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  BEST7003_RS05495 (BEST7003_1028) yhjB 1094397..1095866 (-) 1470 WP_003233134.1 sodium:solute symporter -
  BEST7003_RS05500 (BEST7003_1029) yhjC 1095863..1096063 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  BEST7003_RS05505 (BEST7003_1030) - 1096271..1096633 (-) 363 WP_003233132.1 hypothetical protein -
  BEST7003_RS05510 (BEST7003_1031) yhjE 1096785..1097408 (+) 624 WP_010886465.1 VTT domain-containing protein -
  BEST7003_RS05515 (BEST7003_1032) lepB 1097410..1097916 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=65225 BEST7003_RS05480 WP_003245329.1 1092344..1092922(+) (comK) [Bacillus subtilis BEST7003]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=65225 BEST7003_RS05480 WP_003245329.1 1092344..1092922(+) (comK) [Bacillus subtilis BEST7003]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment