Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | L4X60_RS14260 | Genome accession | NZ_CP091525 |
| Coordinates | 2868019..2868489 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain N09CSA16 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2856072..2873536 | 2868019..2868489 | within | 0 |
Gene organization within MGE regions
Location: 2856072..2873536
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L4X60_RS14150 (L4X60_14155) | - | 2856072..2857109 (-) | 1038 | WP_000857198.1 | site-specific integrase | - |
| L4X60_RS14155 (L4X60_14160) | - | 2857303..2858007 (-) | 705 | WP_000440838.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| L4X60_RS14160 (L4X60_14165) | - | 2858147..2858314 (-) | 168 | WP_000705241.1 | hypothetical protein | - |
| L4X60_RS14165 (L4X60_14170) | - | 2858384..2858569 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| L4X60_RS14170 (L4X60_14175) | - | 2858566..2858712 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| L4X60_RS14175 (L4X60_14180) | - | 2858786..2859640 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| L4X60_RS14180 (L4X60_14185) | - | 2859652..2860368 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| L4X60_RS14185 (L4X60_14190) | - | 2860532..2860774 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| L4X60_RS14190 (L4X60_14195) | - | 2860787..2861233 (+) | 447 | WP_000435349.1 | hypothetical protein | - |
| L4X60_RS14195 (L4X60_14200) | - | 2861248..2861388 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| L4X60_RS14200 (L4X60_14205) | - | 2861381..2861590 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| L4X60_RS14205 (L4X60_14210) | - | 2861647..2862396 (+) | 750 | WP_001148587.1 | phage antirepressor KilAC domain-containing protein | - |
| L4X60_RS14210 (L4X60_14215) | - | 2862412..2862609 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| L4X60_RS14215 (L4X60_14220) | - | 2862596..2862976 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| L4X60_RS14220 (L4X60_14225) | - | 2863031..2863354 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| L4X60_RS14225 (L4X60_14230) | - | 2863351..2863512 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| L4X60_RS14230 (L4X60_14235) | - | 2863607..2863909 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| L4X60_RS14235 (L4X60_14240) | - | 2863914..2864174 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| L4X60_RS14240 (L4X60_14245) | - | 2864183..2864446 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| L4X60_RS14245 (L4X60_14250) | - | 2864455..2866398 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| L4X60_RS14250 (L4X60_14255) | - | 2866400..2867320 (+) | 921 | WP_000138478.1 | recombinase RecT | - |
| L4X60_RS14255 (L4X60_14260) | - | 2867401..2868018 (+) | 618 | WP_078065370.1 | MBL fold metallo-hydrolase | - |
| L4X60_RS14260 (L4X60_14265) | ssbA | 2868019..2868489 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| L4X60_RS14265 (L4X60_14270) | - | 2868519..2869413 (+) | 895 | Protein_2786 | DnaD domain protein | - |
| L4X60_RS14270 (L4X60_14275) | - | 2869420..2869638 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| L4X60_RS14275 (L4X60_14280) | - | 2869647..2870051 (+) | 405 | WP_000401979.1 | RusA family crossover junction endodeoxyribonuclease | - |
| L4X60_RS14280 (L4X60_14285) | - | 2870064..2870435 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| L4X60_RS14285 (L4X60_14290) | - | 2870435..2870692 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| L4X60_RS14290 (L4X60_14295) | - | 2870689..2870937 (+) | 249 | WP_000178987.1 | SAV1978 family virulence-associated passenger protein | - |
| L4X60_RS14295 (L4X60_14300) | - | 2870952..2871197 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| L4X60_RS14300 (L4X60_14305) | - | 2871194..2871730 (+) | 537 | WP_000185693.1 | dUTPase | - |
| L4X60_RS14305 (L4X60_14310) | - | 2871767..2872012 (+) | 246 | WP_001282071.1 | hypothetical protein | - |
| L4X60_RS14310 (L4X60_14315) | - | 2872009..2872215 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| L4X60_RS14315 (L4X60_14320) | - | 2872212..2872361 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| L4X60_RS14320 (L4X60_14325) | - | 2872361..2872561 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| L4X60_RS14325 (L4X60_14330) | - | 2872589..2873005 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| L4X60_RS14330 (L4X60_14335) | - | 2873237..2873536 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=652166 L4X60_RS14260 WP_000934759.1 2868019..2868489(+) (ssbA) [Staphylococcus aureus strain N09CSA16]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=652166 L4X60_RS14260 WP_000934759.1 2868019..2868489(+) (ssbA) [Staphylococcus aureus strain N09CSA16]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |