Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT76_RS16280 Genome accession   NZ_CP108053
Coordinates   3596266..3596895 (-) Length   209 a.a.
NCBI ID   WP_328871553.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00287     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3591266..3601895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT76_RS16265 (OHT76_16290) - 3591367..3591756 (-) 390 WP_328871550.1 hypothetical protein -
  OHT76_RS16270 (OHT76_16295) - 3591839..3595546 (-) 3708 WP_328871551.1 ABC transporter ATP-binding protein -
  OHT76_RS16275 (OHT76_16300) - 3595690..3596262 (+) 573 WP_328871552.1 hypothetical protein -
  OHT76_RS16280 (OHT76_16305) vraR 3596266..3596895 (-) 630 WP_328871553.1 response regulator transcription factor Regulator
  OHT76_RS16285 (OHT76_16310) - 3596892..3598118 (-) 1227 WP_328871554.1 sensor histidine kinase -
  OHT76_RS16290 (OHT76_16315) - 3598330..3598872 (+) 543 WP_328871555.1 heme-binding protein -
  OHT76_RS16295 (OHT76_16320) - 3598885..3599904 (-) 1020 WP_328871556.1 esterase-like activity of phytase family protein -
  OHT76_RS16300 (OHT76_16325) - 3599953..3600795 (-) 843 WP_328871557.1 serine hydrolase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22135.40 Da        Isoelectric Point: 5.3468

>NTDB_id=652086 OHT76_RS16280 WP_328871553.1 3596266..3596895(-) (vraR) [Streptomyces sp. NBC_00287]
MTVRILLCDDHAVVRAGLLALLDSAPDIEVVGEAGTGEEALALVAKLTPDVVLMDLQLGEGIDGVETTRRLTSNTPSGAP
HVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIHAAAQGRTALSAPVAGRVMANLRNPRPTLTDREREILGKLS
QGLGNREIAKALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 630 bp        

>NTDB_id=652086 OHT76_RS16280 WP_328871553.1 3596266..3596895(-) (vraR) [Streptomyces sp. NBC_00287]
ATGACCGTACGGATCCTGCTCTGCGACGACCACGCCGTCGTACGGGCCGGGCTGCTCGCCCTCCTCGACAGCGCCCCCGA
CATCGAGGTCGTCGGCGAGGCGGGCACCGGCGAGGAGGCGCTGGCGCTGGTGGCGAAGCTCACGCCGGACGTCGTCCTGA
TGGACCTCCAGCTGGGGGAGGGCATCGACGGCGTGGAGACGACTCGCCGCCTGACCTCGAACACGCCGTCCGGCGCCCCC
CACGTCCTCGTGCTCACCACCTACGACACCGACGCCGACATCACCCGAGCCATCGAGGCCGGCGCCACCGGCTACCTCCT
GAAGGCCGAGCGCCCCGAGGAACTCTTCGCCGCGATCCACGCGGCCGCGCAAGGCCGCACCGCGCTCTCCGCGCCGGTGG
CAGGCCGGGTGATGGCCAACCTCCGCAACCCCCGCCCCACCCTGACCGACCGCGAACGCGAGATCCTCGGCAAGCTCTCC
CAGGGCCTCGGCAACCGCGAGATCGCCAAGGCCCTGTTCATCAGCGAGGCCACGGTCAAGACCCACCTCGGCCGCATCTA
CGACAAGCTCGGCGTGGACACCAGGGCGGGAGCGGTGTCGGTGGCGAAGGAGCAGAGGCTGCTGCCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.679

100

0.392
  degU Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.383
  letA Legionella pneumophila str. Paris

36.493

100

0.368
  letA Legionella pneumophila strain ERS1305867

36.493

100

0.368