Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LVJ85_RS12285 Genome accession   NZ_CP091522
Coordinates   2509635..2511791 (+) Length   718 a.a.
NCBI ID   WP_244740070.1    Uniprot ID   -
Organism   Neisseria sp. Dent CA1/247     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2504635..2516791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ85_RS12265 (LVJ85_12265) pilM 2506709..2507806 (+) 1098 WP_085363308.1 type IV pilus assembly protein PilM -
  LVJ85_RS12270 (LVJ85_12270) - 2507808..2508425 (+) 618 WP_085363307.1 PilN domain-containing protein -
  LVJ85_RS12275 (LVJ85_12275) - 2508427..2509071 (+) 645 WP_085363306.1 type 4a pilus biogenesis protein PilO -
  LVJ85_RS12280 (LVJ85_12280) pilP 2509089..2509622 (+) 534 WP_244740069.1 pilus assembly protein PilP Machinery gene
  LVJ85_RS12285 (LVJ85_12285) pilQ 2509635..2511791 (+) 2157 WP_244740070.1 type IV pilus secretin PilQ Machinery gene
  LVJ85_RS12290 (LVJ85_12290) - 2511849..2512394 (+) 546 WP_244740071.1 shikimate kinase -
  LVJ85_RS12295 (LVJ85_12295) aroB 2512637..2513716 (+) 1080 WP_244740072.1 3-dehydroquinate synthase -
  LVJ85_RS12300 (LVJ85_12300) acnB 2514173..2516758 (-) 2586 WP_244740074.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase -

Sequence

Protein


Download         Length: 718 a.a.        Molecular weight: 78412.12 Da        Isoelectric Point: 9.7090

>NTDB_id=652076 LVJ85_RS12285 WP_244740070.1 2509635..2511791(+) (pilQ) [Neisseria sp. Dent CA1/247]
MNSRNITKIFSAITIGFAVQTACAGNITDINVSSLPDNQKIIKIKFDKDVTAPRGFVTSTPARIALDFAGTSIQLPQPVL
EYADPLLNQITAAQNDNRARILLGLNKASQYNTEIKGDEVWVYISEATNKTSNVPQQSVSTPAAIKSAPAKSEQVAVSAN
IDFRKGSRNSGIVELNAPSFTGEPEIKKQSDRITITLKNYPLPTQAQRSLDVADFNTPVRNVTIKRIGNNTQLIIRNQGS
WDVQTQGAHGRYSFEVVRKANISAQGLANTPQKSFNGRKISLDFQDVEVRTILQILAKESGMNIVASDTVNGKMTLSLKD
VPWDQALDLVMQARNLDMRRQGNIINVAPREELLAKDKATLQAQKEIDDLGPLLSQTFQLKYKNVEEFRKILRLDESGSN
NDRNSMLSGRGSALIDPATNTLIITDNRHVIQKFQKLIDELDVPTRQVMVEARIVEANDDFSRDIGVKFGATGVKGASSW
GSDWTNAVNNYGTEVNNRRTITNAILSGSNSIPAKTPLQMNPNISLPIASATTSIALVRAISSGALGLELTAMQEQSRGK
IISNPRVLTQDRKEAMIESGSEIPYEEATSSGATSITFKKAVLGLTVTPNITPDGQVIMTVKINKDSPTDCISGGVTTKC
ITTKQLQTQAMVEDGGTLIVGGIYEEENGNTVSKVPLLGDIPVVGNLFKSRTRKERRRELLIFITPRIMDNVGSNLRY

Nucleotide


Download         Length: 2157 bp        

>NTDB_id=652076 LVJ85_RS12285 WP_244740070.1 2509635..2511791(+) (pilQ) [Neisseria sp. Dent CA1/247]
ATGAACTCACGCAACATTACAAAGATTTTTTCAGCCATCACCATCGGCTTTGCCGTTCAGACGGCCTGTGCAGGCAATAT
TACTGATATCAACGTATCCTCTCTGCCTGACAATCAAAAAATTATCAAAATCAAATTCGATAAAGACGTTACCGCTCCTC
GCGGCTTTGTAACCAGCACTCCTGCGCGTATTGCACTGGACTTCGCCGGCACCTCCATCCAACTGCCGCAACCGGTTTTG
GAATATGCAGATCCTTTATTGAATCAAATTACTGCGGCGCAAAACGATAATCGTGCACGCATTTTATTGGGTTTGAATAA
AGCCAGCCAATACAACACCGAAATCAAAGGTGATGAGGTTTGGGTGTATATCAGTGAAGCCACTAATAAAACGAGCAACG
TGCCGCAACAAAGCGTGTCCACTCCTGCCGCCATCAAATCAGCACCGGCAAAAAGTGAGCAAGTTGCCGTTTCTGCCAAT
ATTGATTTCCGCAAAGGCTCTCGAAATTCAGGCATTGTGGAATTGAACGCCCCTTCCTTTACCGGTGAACCTGAAATCAA
AAAACAAAGCGATAGAATCACCATTACTCTGAAAAACTACCCGCTTCCTACCCAAGCGCAACGTAGTTTAGATGTGGCTG
ATTTCAATACGCCTGTTCGCAACGTAACCATCAAGCGCATTGGCAACAACACCCAGCTCATTATCCGTAACCAAGGCAGC
TGGGATGTACAAACGCAAGGTGCTCACGGACGCTATAGCTTTGAAGTGGTTAGAAAAGCCAATATTTCCGCTCAAGGCCT
GGCAAACACACCGCAAAAATCATTTAACGGACGCAAAATTTCTTTGGATTTCCAAGATGTGGAAGTACGAACCATTCTGC
AAATCCTGGCAAAAGAGTCCGGCATGAACATCGTTGCCAGCGACACGGTAAACGGCAAAATGACCCTGTCGCTCAAAGAC
GTTCCTTGGGATCAAGCACTCGACTTGGTCATGCAAGCCCGCAACCTTGATATGCGCCGCCAAGGCAATATCATCAACGT
TGCTCCACGTGAAGAGTTATTGGCCAAAGACAAAGCTACCCTGCAAGCTCAGAAAGAAATTGATGACTTGGGTCCCTTGC
TGTCTCAAACTTTCCAGCTCAAATATAAAAATGTGGAAGAATTCCGCAAAATCTTGCGCCTTGATGAGAGTGGTAGCAAC
AACGACCGCAACAGCATGTTGAGCGGAAGAGGCAGTGCGCTGATTGATCCTGCTACCAACACACTGATTATTACGGACAA
CCGCCACGTCATTCAAAAATTCCAAAAATTGATTGACGAATTGGATGTGCCAACCCGCCAAGTGATGGTGGAAGCCCGTA
TTGTAGAAGCCAACGATGATTTCTCTCGCGATATCGGCGTGAAGTTTGGTGCTACCGGTGTGAAAGGAGCGAGCAGCTGG
GGCTCTGATTGGACAAATGCGGTAAACAACTACGGCACAGAAGTGAACAACCGCCGTACTATTACCAATGCTATCTTAAG
CGGCTCTAACAGCATCCCCGCCAAAACCCCGCTTCAAATGAACCCGAATATCAGTTTGCCGATTGCTTCTGCGACAACCA
GCATTGCATTGGTCCGTGCGATTTCATCAGGTGCTTTGGGCTTAGAATTGACAGCGATGCAAGAGCAAAGCAGAGGTAAA
ATCATATCCAACCCGCGCGTGTTAACCCAAGACCGCAAAGAAGCCATGATTGAATCAGGCTCTGAAATTCCTTACGAAGA
GGCTACATCAAGTGGCGCCACTTCTATTACTTTCAAAAAGGCTGTGTTGGGTTTAACTGTTACGCCTAATATCACGCCAG
ACGGGCAAGTCATTATGACGGTGAAAATCAACAAAGACAGCCCAACCGACTGTATATCCGGCGGCGTGACAACTAAATGT
ATTACCACCAAACAACTTCAAACCCAAGCCATGGTTGAAGATGGAGGCACACTCATTGTCGGCGGTATTTACGAAGAAGA
AAACGGCAATACAGTGAGCAAAGTGCCCCTGCTGGGTGACATTCCGGTGGTAGGCAATCTGTTCAAATCACGCACCCGCA
AAGAACGTCGTCGCGAACTGCTGATTTTCATTACTCCGCGCATTATGGATAATGTAGGCAGCAACTTACGCTACTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(376-447)

AMIN domain (AMIN)

(37-115)

Bacterial type II and III secretion system protein (Secretin)

(552-710)

Secretin and TonB N terminus short domain (STN)

(303-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

58.365

100

0.636
  pilQ Neisseria gonorrhoeae strain FA1090

60.671

100

0.63
  pilQ Neisseria meningitidis MC58

65.248

78.552

0.513