Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LVJ85_RS12280 Genome accession   NZ_CP091522
Coordinates   2509089..2509622 (+) Length   177 a.a.
NCBI ID   WP_244740069.1    Uniprot ID   -
Organism   Neisseria sp. Dent CA1/247     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2504089..2514622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ85_RS12260 (LVJ85_12260) - 2504090..2506558 (-) 2469 WP_370686923.1 penicillin-binding protein 1A -
  LVJ85_RS12265 (LVJ85_12265) pilM 2506709..2507806 (+) 1098 WP_085363308.1 type IV pilus assembly protein PilM -
  LVJ85_RS12270 (LVJ85_12270) - 2507808..2508425 (+) 618 WP_085363307.1 PilN domain-containing protein -
  LVJ85_RS12275 (LVJ85_12275) - 2508427..2509071 (+) 645 WP_085363306.1 type 4a pilus biogenesis protein PilO -
  LVJ85_RS12280 (LVJ85_12280) pilP 2509089..2509622 (+) 534 WP_244740069.1 pilus assembly protein PilP Machinery gene
  LVJ85_RS12285 (LVJ85_12285) pilQ 2509635..2511791 (+) 2157 WP_244740070.1 type IV pilus secretin PilQ Machinery gene
  LVJ85_RS12290 (LVJ85_12290) - 2511849..2512394 (+) 546 WP_244740071.1 shikimate kinase -
  LVJ85_RS12295 (LVJ85_12295) aroB 2512637..2513716 (+) 1080 WP_244740072.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19414.85 Da        Isoelectric Point: 9.2765

>NTDB_id=652075 LVJ85_RS12280 WP_244740069.1 2509089..2509622(+) (pilP) [Neisseria sp. Dent CA1/247]
MKKTLLLAGILAASACTSSHDDLSQWMKETRQQAKSKIIPFEAPAAIQAKTYTAPNFSGLNAFDSKRLIAMQQGANAPNN
NRPKEILESFSLENLKYVGSLTKGKQTSGYIEANGHVYTVLPGNYIGQNHGRIQSIIADKILITELVEDSNGNWTYRKAE
LLLSSSDNNRDAAQNNN

Nucleotide


Download         Length: 534 bp        

>NTDB_id=652075 LVJ85_RS12280 WP_244740069.1 2509089..2509622(+) (pilP) [Neisseria sp. Dent CA1/247]
ATGAAAAAAACACTACTACTCGCAGGCATATTGGCTGCTTCCGCCTGCACATCGTCTCATGATGACTTAAGCCAATGGAT
GAAAGAAACACGGCAACAGGCCAAATCAAAAATTATTCCTTTTGAAGCACCTGCTGCCATTCAGGCAAAGACTTATACAG
CACCCAATTTTAGCGGGCTTAACGCTTTTGACAGCAAACGACTGATTGCCATGCAGCAGGGAGCAAATGCACCTAATAAC
AACAGACCTAAAGAAATTCTCGAAAGCTTCAGTTTAGAGAATCTCAAATATGTTGGCAGCCTGACTAAAGGCAAACAAAC
TTCGGGCTATATCGAAGCCAATGGACATGTTTATACCGTACTCCCCGGCAACTATATCGGCCAAAACCACGGACGCATCC
AATCCATCATTGCGGATAAGATTTTAATTACCGAATTAGTCGAAGACAGCAATGGAAATTGGACATACCGTAAAGCAGAA
CTATTATTGAGCAGCTCAGACAATAACCGTGACGCCGCTCAAAACAACAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

54.386

96.61

0.525