Detailed information NTG0652036

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LVJ77_RS03960
• Genome accession: NZ_CP091521
• Coordinates: 829467..830381 (+)
• Length: 304 a.a.
• NCBI ID: WP_027009372.1
• Uniprot ID: -
• Organism: Conchiformibius kuhniae strain 17694
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 824467..835381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVJ77_RS03940 (LVJ77_11140)	aroE	824836..825666 (+)	831	WP_027009368.1	shikimate dehydrogenase	-
LVJ77_RS03945 (LVJ77_11135)	mtgA	825663..826349 (+)	687	WP_027009369.1	monofunctional biosynthetic peptidoglycan transglycosylase	-
LVJ77_RS03950 (LVJ77_11130)	pilF	826484..828163 (+)	1680	WP_027009370.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LVJ77_RS03955 (LVJ77_11125)	pilG	828199..829467 (+)	1269	WP_027009371.1	type II secretion system F family protein	Machinery gene
LVJ77_RS03960 (LVJ77_11120)	pilD	829467..830381 (+)	915	WP_027009372.1	A24 family peptidase	Machinery gene
LVJ77_RS03965 (LVJ77_11115)	coaE	830385..831011 (+)	627	WP_027009373.1	dephospho-CoA kinase	-
LVJ77_RS03970 (LVJ77_11110)	zapD	831124..831879 (+)	756	WP_027009374.1	cell division protein ZapD	-
LVJ77_RS03975 (LVJ77_11105)	-	831956..832390 (-)	435	WP_027009375.1	hypothetical protein	-
LVJ77_RS03980 (LVJ77_11100)	-	832423..833370 (-)	948	WP_245571932.1	YheT family hydrolase	-
LVJ77_RS03985 (LVJ77_11095)	-	833376..833855 (-)	480	WP_376986744.1	DUF2750 domain-containing protein	-
LVJ77_RS03990 (LVJ77_11090)	yjgA	833921..834445 (-)	525	WP_027009378.1	ribosome biogenesis factor YjgA	-
LVJ77_RS03995 (LVJ77_11085)	-	834528..835010 (-)	483	WP_156900808.1	hypothetical protein	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 32490.70 Da
• Isoelectric Point: 9.2258

>NTDB_id=652036 LVJ77_RS03960 WP_027009372.1 829467..830381(+) (pilD) [Conchiformibius kuhniae strain 17694]
MMEETVFAVAAAGLLGLMVGSFLNVVIYRLPVMMNREYDRAAKEILAKPVEQVLAWLPADKAASGRALLGVAAEPPPRFN
LLLPRSRCGSCGAGIKAWQNIPVLSWLLLRGRCGSCRAPVSVRYPLVELLTGVLFGVVAWRYGADAVTAWGCVLTAFVLA
LTFIDADTQLLPDDLTLPLVWLGLLFNLHTGFVPLSQAVWGAVAGYMSLWTLYQTFKLLTGKEGMGHGDFKLLAAVGAWV
GAAVLPVVVLGASLVGIAAALVKRVGKGQPMAFGPCLAVAGWLVFLFHNQVGTLIAWWLAKSGF

Nucleotide

• Length: 915 bp

>NTDB_id=652036 LVJ77_RS03960 WP_027009372.1 829467..830381(+) (pilD) [Conchiformibius kuhniae strain 17694]
ATGATGGAAGAAACGGTGTTTGCGGTGGCGGCGGCAGGGCTGCTGGGCTTGATGGTGGGCAGTTTTCTCAATGTGGTCAT
CTACCGGCTGCCGGTGATGATGAACAGGGAATACGACCGCGCCGCCAAAGAGATTTTGGCAAAGCCTGTGGAACAGGTGC
TGGCATGGCTGCCCGCCGACAAAGCCGCCTCAGGACGGGCTTTGTTGGGCGTGGCTGCCGAGCCGCCGCCGCGTTTCAAT
CTGCTGCTACCGCGTTCGCGTTGCGGAAGCTGCGGGGCGGGCATCAAGGCATGGCAGAACATTCCCGTATTGAGCTGGCT
GCTGCTGCGCGGACGCTGCGGCAGTTGCCGTGCGCCCGTGAGTGTGCGTTACCCTTTGGTGGAATTGCTCACGGGCGTGC
TGTTTGGCGTGGTGGCGTGGCGTTACGGCGCGGACGCGGTAACGGCTTGGGGCTGTGTTTTGACGGCGTTTGTGCTTGCG
CTGACGTTTATCGATGCCGATACCCAGCTTTTGCCCGATGATTTGACGCTGCCTTTGGTGTGGTTGGGGCTGCTGTTCAA
TCTGCATACGGGTTTCGTGCCGCTTTCGCAAGCGGTGTGGGGCGCGGTGGCAGGCTACATGAGCTTGTGGACGCTGTACC
AGACGTTCAAGCTGCTGACGGGCAAGGAAGGCATGGGACACGGCGATTTCAAACTGCTTGCCGCAGTCGGCGCGTGGGTG
GGCGCGGCGGTGCTGCCGGTGGTGGTATTGGGCGCATCGCTGGTCGGGATTGCCGCCGCGCTGGTCAAACGGGTGGGCAA
GGGTCAGCCGATGGCGTTCGGGCCCTGCTTGGCGGTGGCGGGGTGGCTGGTGTTTCTGTTTCACAATCAAGTCGGCACGC
TAATTGCTTGGTGGTTGGCAAAATCGGGCTTTTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-142)

• Type IV leader peptidase family (Peptidase_A24) (152-260)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	55.254	97.039	0.536
pilD	Vibrio cholerae strain A1552	47.735	94.408	0.451
pilD	Vibrio campbellii strain DS40M4	44.828	95.395	0.428
pilD	Acinetobacter baumannii D1279779	45.23	93.092	0.421
pilD	Acinetobacter nosocomialis M2	44.523	93.092	0.414