Detailed information NTG0651987

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LVJ79_RS08040
• Genome accession: NZ_CP091518
• Coordinates: 1503501..1504403 (-)
• Length: 300 a.a.
• NCBI ID: WP_003787782.1
• Uniprot ID: A0AAX2J6E6
• Organism: Kingella kingae strain 4177/66
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1498501..1509403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVJ79_RS08015 (LVJ79_08015)	-	1499621..1500814 (+)	1194	WP_003787791.1	acetate kinase	-
LVJ79_RS08020 (LVJ79_08020)	-	1500889..1501509 (-)	621	WP_003787790.1	L-threonylcarbamoyladenylate synthase	-
LVJ79_RS08025 (LVJ79_08025)	pncC	1501519..1501995 (-)	477	WP_003787789.1	nicotinamide-nucleotide amidase	-
LVJ79_RS08030 (LVJ79_08030)	zapD	1502015..1502776 (-)	762	WP_003787787.1	cell division protein ZapD	-
LVJ79_RS08035 (LVJ79_08035)	coaE	1502891..1503499 (-)	609	WP_003787784.1	dephospho-CoA kinase	-
LVJ79_RS08040 (LVJ79_08040)	pilD	1503501..1504403 (-)	903	WP_003787782.1	prepilin peptidase	Machinery gene
LVJ79_RS08045 (LVJ79_08045)	pilG	1504415..1505683 (-)	1269	WP_003787779.1	type II secretion system F family protein	Machinery gene
LVJ79_RS08050 (LVJ79_08050)	pilF	1505730..1507415 (-)	1686	WP_003787777.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LVJ79_RS08055 (LVJ79_08055)	lysA	1507601..1508827 (-)	1227	WP_003787776.1	diaminopimelate decarboxylase	-
LVJ79_RS08060 (LVJ79_08060)	lptM	1508827..1508988 (-)	162	WP_003787775.1	LPS translocon maturation chaperone LptM	-
LVJ79_RS08065 (LVJ79_08065)	cyaY	1509079..1509402 (+)	324	WP_099046165.1	iron donor protein CyaY	-

Sequence

Protein

• Length: 300 a.a.
• Molecular weight: 33368.63 Da
• Isoelectric Point: 7.8678

>NTDB_id=651987 LVJ79_RS08040 WP_003787782.1 1503501..1504403(-) (pilD) [Kingella kingae strain 4177/66]
MNNLEIWIALLFGLLIGSFLNVVIYRLPVMLNRDWTEAACEQLNINDEFWQKQPASVEQGLREHFGLNRAVSGTFNLMTP
PSRCGNCGSAVRPWQNIPVLSWLMLRGKCAGCHKPISIRYPLVELLTGVLFAVMAFKYGWTWYTVGACLFTAYVVAMTFI
DADTQLLPDDLTIPLMRWGLLFNLLTGFIPLTQSVWGMLIGYMSLWTLSQTYKLIRGVDGMGAGDFKMLAAIGAWLGAWI
LPVVIFAAAMVFLVVAIIRGIGKEQPMAYGPCLGVAGWLVFLFYDVVMRGVTAWLTGSGF

Nucleotide

• Length: 903 bp

>NTDB_id=651987 LVJ79_RS08040 WP_003787782.1 1503501..1504403(-) (pilD) [Kingella kingae strain 4177/66]
ATGAACAATTTGGAAATTTGGATTGCGCTACTTTTCGGCTTACTCATCGGCAGCTTTTTAAATGTGGTCATTTATCGGCT
GCCCGTGATGCTTAACCGCGATTGGACAGAAGCAGCCTGCGAGCAACTCAATATCAACGATGAATTTTGGCAAAAGCAGC
CTGCATCCGTAGAACAAGGTCTGCGCGAACACTTTGGCTTAAACCGTGCTGTGTCAGGCACATTCAACTTGATGACACCG
CCATCGCGTTGTGGCAACTGCGGTTCAGCCGTGCGTCCTTGGCAAAACATTCCTGTGTTGAGCTGGTTGATGTTGCGTGG
CAAATGTGCAGGCTGCCACAAACCCATTAGCATTCGCTATCCTTTGGTAGAACTACTCACAGGCGTGTTGTTTGCGGTAA
TGGCATTCAAGTATGGCTGGACTTGGTACACCGTAGGCGCGTGTTTGTTTACCGCTTATGTCGTTGCCATGACCTTTATT
GATGCCGACACCCAACTTTTGCCCGATGACTTAACCATTCCATTGATGCGCTGGGGCTTGTTGTTTAACTTGCTTACAGG
CTTCATTCCGCTAACGCAATCGGTTTGGGGCATGTTGATTGGCTACATGAGTCTGTGGACGCTGTCGCAAACCTATAAAC
TAATTCGTGGCGTGGACGGCATGGGCGCAGGCGATTTCAAAATGCTGGCTGCGATTGGTGCGTGGCTGGGTGCATGGATT
TTGCCTGTGGTGATTTTTGCTGCGGCGATGGTGTTTTTGGTGGTTGCCATTATTCGGGGCATTGGCAAAGAACAGCCAAT
GGCATACGGCCCGTGTTTGGGCGTTGCCGGCTGGTTGGTCTTTTTGTTTTACGATGTGGTGATGCGTGGCGTAACAGCTT
GGCTCACTGGGTCGGGTTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (11-137)

• Type IV leader peptidase family (Peptidase_A24) (150-256)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	51.211	96.333	0.493
pilD	Vibrio cholerae strain A1552	41.812	95.667	0.4
pilD	Acinetobacter baumannii D1279779	41.237	97	0.4
pilD	Acinetobacter nosocomialis M2	40.55	97	0.393
pilD	Vibrio campbellii strain DS40M4	41.877	92.333	0.387