Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LVJ84_RS02025 Genome accession   NZ_CP091516
Coordinates   331599..332114 (-) Length   171 a.a.
NCBI ID   WP_244732185.1    Uniprot ID   -
Organism   Kingella potus strain 3/SID/1128     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 326599..337114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ84_RS01980 (LVJ84_01980) - 326838..327254 (+) 417 WP_115308046.1 nuclear transport factor 2 family protein -
  LVJ84_RS01985 (LVJ84_01985) - 327226..327936 (+) 711 WP_244732179.1 hypothetical protein -
  LVJ84_RS01990 (LVJ84_01990) - 327989..328215 (+) 227 Protein_389 nuclear transport factor 2 family protein -
  LVJ84_RS01995 (LVJ84_01995) - 328255..328515 (+) 261 WP_115308048.1 hypothetical protein -
  LVJ84_RS02000 (LVJ84_02000) - 328567..328842 (+) 276 WP_244732181.1 GNAT family N-acetyltransferase -
  LVJ84_RS02005 (LVJ84_02005) - 328937..330185 (+) 1249 Protein_392 capsule biosynthesis protein -
  LVJ84_RS02010 (LVJ84_02010) - 330273..331031 (+) 759 WP_244732183.1 ATP-binding cassette domain-containing protein -
  LVJ84_RS02015 (LVJ84_02015) - 331115..331300 (+) 186 WP_147286590.1 hypothetical protein -
  LVJ84_RS02020 (LVJ84_02020) - 331285..331602 (+) 318 WP_115308053.1 hypothetical protein -
  LVJ84_RS02025 (LVJ84_02025) ssb 331599..332114 (-) 516 WP_244732185.1 single-stranded DNA-binding protein Machinery gene
  LVJ84_RS02030 (LVJ84_02030) - 332119..333503 (-) 1385 Protein_397 MFS transporter -
  LVJ84_RS02035 (LVJ84_02035) - 333546..333704 (+) 159 WP_244732187.1 hypothetical protein -
  LVJ84_RS02040 (LVJ84_02040) trpS 333701..334711 (+) 1011 WP_244732198.1 tryptophan--tRNA ligase -
  LVJ84_RS02045 (LVJ84_02045) - 334786..335679 (+) 894 WP_115308056.1 prephenate dehydrogenase -
  LVJ84_RS02050 (LVJ84_02050) - 335852..336397 (-) 546 WP_115308301.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19452.48 Da        Isoelectric Point: 5.0427

>NTDB_id=651952 LVJ84_RS02025 WP_244732185.1 331599..332114(-) (ssb) [Kingella potus strain 3/SID/1128]
MSVNKVILIGTVSYRDPEVRYMPNGDPVCNFTMATSETWNDRQSGQRQERTEWHNITMYRRLAEISGQYLKKGSQIYIEG
RIQSRKYQDRDGNERTAYEIIANEMKMLDSRQSGGGAPYQEGGYPQAAPQQQQYRQEAPPQYSSEPPAAPARRQSAAPAA
PVEDIDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=651952 LVJ84_RS02025 WP_244732185.1 331599..332114(-) (ssb) [Kingella potus strain 3/SID/1128]
ATGAGCGTCAATAAAGTCATCCTCATCGGTACCGTCTCTTACCGCGATCCCGAAGTGCGCTATATGCCCAACGGCGACCC
CGTCTGCAACTTCACGATGGCCACCAGCGAAACCTGGAACGACCGCCAGAGCGGCCAACGGCAGGAGCGCACCGAGTGGC
ACAACATCACCATGTACCGCCGCCTGGCCGAAATCTCCGGCCAGTATCTGAAAAAAGGCAGCCAGATCTATATCGAAGGC
CGCATCCAAAGCCGCAAATACCAGGACCGTGACGGCAATGAGCGCACCGCCTACGAAATCATCGCCAACGAAATGAAAAT
GCTCGATTCCCGCCAGAGCGGCGGCGGCGCGCCCTATCAGGAAGGCGGCTACCCGCAGGCTGCGCCGCAACAGCAGCAAT
ACCGTCAGGAAGCCCCGCCGCAGTACAGCAGCGAGCCGCCCGCCGCGCCCGCCCGCCGCCAGAGTGCCGCGCCCGCCGCA
CCGGTGGAAGACATCGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

70.621

100

0.731
  ssb Neisseria meningitidis MC58

70.056

100

0.725
  ssb Vibrio cholerae strain A1552

46.561

100

0.515
  ssb Glaesserella parasuis strain SC1401

43.258

100

0.45