Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT51_RS33015 Genome accession   NZ_CP108039
Coordinates   7404555..7405196 (+) Length   213 a.a.
NCBI ID   WP_328882567.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00299     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7399555..7410196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT51_RS32995 (OHT51_33045) - 7400227..7400988 (-) 762 WP_328882563.1 transglycosylase SLT domain-containing protein -
  OHT51_RS33000 (OHT51_33050) - 7401288..7402481 (-) 1194 WP_328882564.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHT51_RS33005 (OHT51_33055) - 7402478..7403176 (-) 699 WP_328882565.1 SDR family oxidoreductase -
  OHT51_RS33010 (OHT51_33060) - 7403417..7404562 (+) 1146 WP_328882566.1 GAF domain-containing sensor histidine kinase -
  OHT51_RS33015 (OHT51_33065) vraR 7404555..7405196 (+) 642 WP_328882567.1 response regulator transcription factor Regulator
  OHT51_RS33020 (OHT51_33070) chpE 7405365..7405610 (+) 246 WP_328882568.1 chaplin ChpE -
  OHT51_RS33025 (OHT51_33075) - 7405850..7406638 (-) 789 WP_328882569.1 hypothetical protein -
  OHT51_RS33030 (OHT51_33080) - 7406785..7407582 (+) 798 WP_328428683.1 ABC transporter ATP-binding protein -
  OHT51_RS33035 (OHT51_33085) - 7407677..7408108 (+) 432 WP_328882570.1 NfeD family protein -
  OHT51_RS33040 (OHT51_33090) - 7408241..7409185 (+) 945 WP_328882571.1 SPFH domain-containing protein -
  OHT51_RS33045 (OHT51_33095) - 7409325..7409831 (-) 507 WP_328882572.1 HNH endonuclease -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22899.25 Da        Isoelectric Point: 5.3661

>NTDB_id=651952 OHT51_RS33015 WP_328882567.1 7404555..7405196(+) (vraR) [Streptomyces sp. NBC_00299]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVARAEELKPDVVLMDVKMPGMDGVDALRKLRELGNPVR
VLIVTSFTEQRTVIPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEEANSGQGRAGSLTDREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGMTG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=651952 OHT51_RS33015 WP_328882567.1 7404555..7405196(+) (vraR) [Streptomyces sp. NBC_00299]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGGGGCCTGCGCACGTTCCTCGAAGTGCA
GGACGACATCGAGGTCGTGGGCGAGGCCGCCGACGGCGCCGAGGGAGTGGCCCGCGCCGAGGAACTCAAGCCCGACGTCG
TGCTGATGGACGTCAAGATGCCGGGCATGGACGGCGTGGACGCCCTGCGCAAGCTCCGCGAACTGGGCAACCCCGTGCGC
GTGCTGATCGTCACCAGCTTCACCGAACAGCGCACGGTGATCCCCGCCCTGCGCGCGGGCGCCGCCGGCTACGTCTACAA
GGACGTGGACCCGGACGCCCTCGCCGGCGCCATCCGTTCCGTGCACGCCGGGCACATCCTGCTCCAACCCGAGGTCGCGG
GCGCCCTGCTGTCCCAGGAGGAGGCCAACTCGGGGCAGGGAAGAGCCGGTTCGCTGACGGACCGCGAACGCGAGGTGCTC
GGCCTGATCGCCGACGGTCGCTCCAACCGCGAGATCGCGCGGGCCCTGGTCCTCTCCGAGAAGACCGTCAAGACACACGT
CTCAAACATCTTGATGAAACTCGACCTGGCGGACCGCACCCAGGCAGCCCTGTGGGCCGTACGCCATGGCATGACCGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.445

99.061

0.46
  degU Bacillus subtilis subsp. subtilis str. 168

38.462

100

0.399