Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LVJ81_RS03035 Genome accession   NZ_CP091512
Coordinates   626608..627171 (+) Length   187 a.a.
NCBI ID   WP_019958052.1    Uniprot ID   -
Organism   Vitreoscilla stercoraria strain SAG 1488-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 621608..632171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ81_RS03005 (LVJ81_03005) - 621865..622641 (-) 777 WP_019958058.1 sulfite exporter TauE/SafE family protein -
  LVJ81_RS03010 (LVJ81_03010) - 622660..623247 (-) 588 WP_019958057.1 CNP1-like family protein -
  LVJ81_RS03015 (LVJ81_03015) - 623369..623596 (+) 228 WP_019958056.1 sulfurtransferase TusA family protein -
  LVJ81_RS03020 (LVJ81_03020) pyrC 623676..624722 (+) 1047 WP_019958055.1 dihydroorotase -
  LVJ81_RS03025 (LVJ81_03025) - 624733..625344 (+) 612 WP_019958054.1 lytic transglycosylase domain-containing protein -
  LVJ81_RS03030 (LVJ81_03030) - 625346..626542 (+) 1197 WP_019958053.1 MFS transporter -
  LVJ81_RS03035 (LVJ81_03035) ssb 626608..627171 (+) 564 WP_019958052.1 single-stranded DNA-binding protein Machinery gene
  LVJ81_RS03040 (LVJ81_03040) greA 627308..627784 (+) 477 WP_019958051.1 transcription elongation factor GreA -
  LVJ81_RS03045 (LVJ81_03045) - 627834..628274 (+) 441 WP_019958050.1 DUF4149 domain-containing protein -
  LVJ81_RS03050 (LVJ81_03050) yhbY 628334..628615 (-) 282 WP_019958049.1 ribosome assembly RNA-binding protein YhbY -
  LVJ81_RS03055 (LVJ81_03055) - 628691..629311 (+) 621 WP_019958048.1 RlmE family RNA methyltransferase -
  LVJ81_RS03060 (LVJ81_03060) ftsH 629382..631403 (+) 2022 WP_051082998.1 ATP-dependent zinc metalloprotease FtsH -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20359.46 Da        Isoelectric Point: 5.8282

>NTDB_id=651906 LVJ81_RS03035 WP_019958052.1 626608..627171(+) (ssb) [Vitreoscilla stercoraria strain SAG 1488-6]
MSVNKVILVGRLGKDPEVRYMTNGEAVTNFGVATSESWKGRDGQKQERTEWHNVTLYRKLAEIAGQYLKKGSQVYIEGKI
QSRKYMGKDGIERTAYEIVGSEMKMLGGRSDASSSSYDDGMGAPYEDNSSQYSGASHSGSYGSGNQYASNAGSPAAPVRQ
EVPAAPSRSMNQPPKVEVDDLNDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=651906 LVJ81_RS03035 WP_019958052.1 626608..627171(+) (ssb) [Vitreoscilla stercoraria strain SAG 1488-6]
ATGTCTGTAAATAAAGTGATTTTAGTGGGCCGCTTGGGAAAAGATCCTGAAGTGCGTTACATGACCAATGGTGAGGCAGT
GACCAATTTTGGTGTGGCCACCAGCGAGTCTTGGAAAGGCCGCGATGGTCAAAAACAAGAGCGTACGGAGTGGCACAATG
TGACTTTGTATCGCAAATTGGCAGAAATTGCAGGCCAATATTTGAAAAAAGGCAGCCAAGTTTACATCGAAGGTAAAATT
CAAAGCCGTAAATACATGGGTAAAGATGGCATTGAGCGCACAGCTTATGAAATCGTAGGCTCAGAAATGAAAATGTTAGG
TGGTCGCTCTGATGCATCATCGTCTTCTTACGATGATGGTATGGGTGCACCTTATGAAGACAATAGCAGCCAATACAGTG
GTGCTAGTCATTCAGGTTCTTATGGCAGTGGCAATCAATATGCGTCTAATGCAGGTAGTCCAGCTGCACCTGTGCGTCAA
GAAGTACCTGCTGCGCCAAGTCGTTCTATGAATCAGCCGCCTAAAGTTGAGGTGGACGATTTGAATGATGATATTCCGTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

61.458

100

0.631
  ssb Neisseria gonorrhoeae MS11

60.417

100

0.62
  ssb Vibrio cholerae strain A1552

45.026

100

0.46
  ssb Glaesserella parasuis strain SC1401

41.398

99.465

0.412