Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LVJ86_RS02245 Genome accession   NZ_CP091510
Coordinates   506800..508977 (-) Length   725 a.a.
NCBI ID   WP_047760728.1    Uniprot ID   A0A0J0YSU1
Organism   Neisseria arctica strain KH1503     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 501800..513977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS02225 (LVJ86_02225) eno 503455..504741 (+) 1287 WP_047760732.1 phosphopyruvate hydratase -
  LVJ86_RS02230 (LVJ86_02230) ftsB 504752..505027 (+) 276 WP_047760731.1 cell division protein FtsB -
  LVJ86_RS02235 (LVJ86_02235) aroB 505115..506197 (-) 1083 WP_047760730.1 3-dehydroquinate synthase -
  LVJ86_RS02240 (LVJ86_02240) - 506201..506734 (-) 534 WP_047760729.1 shikimate kinase -
  LVJ86_RS02245 (LVJ86_02245) pilQ 506800..508977 (-) 2178 WP_047760728.1 type IV pilus secretin PilQ Machinery gene
  LVJ86_RS02250 (LVJ86_02250) pilP 508993..509523 (-) 531 WP_047760727.1 pilus assembly protein PilP Machinery gene
  LVJ86_RS02255 (LVJ86_02255) pilO 509535..510164 (-) 630 WP_047760726.1 type 4a pilus biogenesis protein PilO -
  LVJ86_RS02260 (LVJ86_02260) - 510164..510754 (-) 591 WP_047760725.1 PilN domain-containing protein -
  LVJ86_RS02265 (LVJ86_02265) pilM 510757..511851 (-) 1095 WP_082131244.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 725 a.a.        Molecular weight: 79433.99 Da        Isoelectric Point: 9.5391

>NTDB_id=651853 LVJ86_RS02245 WP_047760728.1 506800..508977(-) (pilQ) [Neisseria arctica strain KH1503]
MKFNKIKMLSAFSLALTLQAAWAGNITDINVSTLPDNQKIIKIKFDRDVVSPSGFITTTPARIALDFPSTGIQLPQSVLE
YADPLLNQITAAQNNDRARILLGLNNAGQYNTEIKGDEVWVYVSEAADKTTAPTYNNNITSTIVSSNSRSAAVATSSNKQ
TQISANIDFRRGNRNSGIIELTAPSFSSQPDIKQQSDRVIITLKNYPLPTQAQRSLDVSDFNTPVRNVTMKRIGNSTQVI
IRNQGSWDIRTQQGNSRFSFEISPKTDVASQGLGSAPKRNFTGRRISLDFQDVEVRTILQILAKESGTNIVASDSVNGKM
TLSLKDVPWDQALDLVMQARNLDMRRQGNIINIAPREELLAKDKATLQAQKEIEELGPLFSQTFQLKYKNVEEFRKILRL
DDSSSNTDKNHNTLLSPRGSALIDPATNTLIITDNRVVIQKFQKLIDELDVPARQVMVEARIVEADDGFSRDIGVKFGYQ
GVGTNNSWGSNWSNAVDNLGAQRTANLANANTILSGGNTITAPTFTMSPNINLPTAAASSSIALVRAIGSGALGLELSAM
QEQNRGKIISNPRVLTQDRKEAVIESGTEIPYEEATSSGATSITFKKAVLGLTVTPNITPDGQIIMTIKINKDTPQDCVI
NSLTTKCISTKNLQTNAMVEDGGTLIVGGIYEEENRNIVNKVPLLGDIPVVGNLFKSRSRNEKRRELLIFITPRIMDNIG
STLRY

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=651853 LVJ86_RS02245 WP_047760728.1 506800..508977(-) (pilQ) [Neisseria arctica strain KH1503]
ATGAAATTCAATAAAATCAAAATGCTTTCTGCTTTCAGCCTCGCTTTGACTCTACAGGCTGCTTGGGCAGGGAATATTAC
AGACATCAATGTTTCAACTTTGCCGGACAATCAGAAAATCATCAAAATCAAATTTGACCGCGATGTAGTATCACCAAGCG
GTTTTATTACGACTACTCCAGCGCGTATTGCCTTAGACTTTCCCAGCACCGGCATTCAATTACCCCAATCCGTATTAGAA
TATGCCGATCCTTTATTAAATCAAATCACAGCTGCCCAAAACAATGATAGGGCGCGTATCCTTCTCGGTCTAAATAATGC
AGGCCAATACAATACCGAAATCAAAGGTGACGAAGTATGGGTCTATGTCAGCGAAGCAGCTGATAAAACAACTGCGCCTA
CTTATAATAACAATATTACCAGCACCATAGTATCAAGCAATTCACGATCCGCAGCTGTTGCTACTTCCAGCAACAAGCAA
ACTCAGATTTCTGCAAACATTGATTTCCGACGCGGTAACCGAAACAGCGGCATTATCGAACTAACAGCTCCTTCTTTCAG
CAGCCAACCGGATATTAAACAACAAAGCGACCGCGTCATCATTACATTGAAAAACTACCCTCTGCCGACTCAAGCGCAGC
GTAGTTTGGATGTCTCTGACTTCAACACCCCCGTCCGAAACGTAACTATGAAACGTATCGGTAATTCGACCCAAGTTATT
ATCCGTAACCAAGGTAGCTGGGATATCCGTACACAGCAGGGCAACAGTCGTTTTAGTTTTGAAATTTCCCCCAAAACTGA
TGTCGCTTCTCAAGGCTTGGGCAGTGCCCCGAAACGCAACTTTACTGGACGCCGTATTTCATTGGATTTCCAAGATGTTG
AGGTTCGTACTATTTTACAAATCTTAGCTAAAGAATCCGGTACCAATATTGTTGCCAGTGATAGCGTAAATGGCAAAATG
ACCCTGAGTCTCAAAGATGTACCTTGGGATCAAGCTTTGGATTTAGTGATGCAGGCACGTAATCTTGATATGCGTCGCCA
AGGCAACATCATCAATATTGCTCCTCGTGAAGAGCTGCTGGCAAAAGATAAAGCAACGTTGCAAGCACAAAAAGAAATTG
AAGAGCTCGGTCCTCTATTTTCACAAACTTTCCAGCTCAAGTATAAAAATGTAGAAGAATTCCGGAAAATTCTACGTTTG
GATGACTCAAGTAGCAATACAGATAAAAACCACAACACCCTACTTAGTCCGCGCGGTAGTGCTTTGATAGATCCTGCCAC
CAATACCCTTATCATCACTGATAACCGTGTTGTAATTCAGAAATTCCAAAAATTAATTGATGAATTGGATGTTCCGGCTC
GTCAAGTGATGGTAGAAGCTCGTATTGTAGAGGCCGATGATGGTTTCTCACGTGATATTGGTGTGAAATTTGGCTATCAA
GGCGTTGGTACGAATAATAGCTGGGGTTCAAACTGGTCAAATGCTGTTGATAACTTGGGTGCACAACGAACAGCCAATCT
AGCTAATGCCAATACTATTTTATCAGGAGGCAATACTATAACGGCTCCTACTTTCACCATGAGTCCCAACATCAACTTGC
CTACAGCTGCAGCCTCCTCCAGCATCGCCTTAGTACGCGCGATCGGCTCCGGCGCATTGGGCTTAGAGCTGAGTGCTATG
CAAGAGCAAAACCGAGGGAAAATTATTTCCAACCCTCGAGTATTGACCCAAGATCGTAAAGAAGCCGTTATCGAATCAGG
TACTGAAATTCCTTATGAAGAAGCTACCTCCAGCGGTGCCACTTCGATTACCTTCAAAAAAGCCGTATTAGGGCTGACTG
TAACACCTAACATCACCCCCGACGGGCAAATTATTATGACTATCAAAATTAATAAAGATACGCCCCAAGACTGTGTGATC
AACAGTTTGACAACTAAATGTATCAGCACTAAAAACCTGCAAACCAATGCGATGGTTGAAGACGGCGGCACCTTAATTGT
CGGTGGTATTTATGAAGAAGAGAACCGTAATATTGTGAATAAAGTACCACTATTAGGAGATATTCCGGTTGTCGGCAATC
TCTTCAAATCTCGATCACGTAATGAAAAACGCCGCGAATTGTTGATCTTTATTACCCCGCGCATTATGGATAATATCGGC
AGTACTCTGCGTTACTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(382-455)

AMIN domain (AMIN)

(35-114)

Secretin and TonB N terminus short domain (STN)

(309-355)

Bacterial type II and III secretion system protein (Secretin)

(559-717)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0YSU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

59.03

100

0.604
  pilQ Neisseria meningitidis MC58

63.668

78.207

0.498
  pilQ Neisseria meningitidis M1080

63.492

78.207

0.497