Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LVJ86_RS02250 Genome accession   NZ_CP091510
Coordinates   508993..509523 (-) Length   176 a.a.
NCBI ID   WP_047760727.1    Uniprot ID   -
Organism   Neisseria arctica strain KH1503     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 503993..514523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS02230 (LVJ86_02230) ftsB 504752..505027 (+) 276 WP_047760731.1 cell division protein FtsB -
  LVJ86_RS02235 (LVJ86_02235) aroB 505115..506197 (-) 1083 WP_047760730.1 3-dehydroquinate synthase -
  LVJ86_RS02240 (LVJ86_02240) - 506201..506734 (-) 534 WP_047760729.1 shikimate kinase -
  LVJ86_RS02245 (LVJ86_02245) pilQ 506800..508977 (-) 2178 WP_047760728.1 type IV pilus secretin PilQ Machinery gene
  LVJ86_RS02250 (LVJ86_02250) pilP 508993..509523 (-) 531 WP_047760727.1 pilus assembly protein PilP Machinery gene
  LVJ86_RS02255 (LVJ86_02255) pilO 509535..510164 (-) 630 WP_047760726.1 type 4a pilus biogenesis protein PilO -
  LVJ86_RS02260 (LVJ86_02260) - 510164..510754 (-) 591 WP_047760725.1 PilN domain-containing protein -
  LVJ86_RS02265 (LVJ86_02265) pilM 510757..511851 (-) 1095 WP_082131244.1 type IV pilus assembly protein PilM -
  LVJ86_RS02270 (LVJ86_02270) - 512001..514415 (+) 2415 WP_047760724.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19685.01 Da        Isoelectric Point: 7.2419

>NTDB_id=651854 LVJ86_RS02250 WP_047760727.1 508993..509523(-) (pilP) [Neisseria arctica strain KH1503]
MKIKLLLPCFIILTACSPKHEDLHQWMEDTQKQAKASIRPFEAPTVNPPQPYNPPTYTGLNAFDSKRLNAANQGTNAPNT
NRPKEVLEAFSLENLRYVGRLTKNGSTSGFVEADGHVYTVRPGNYIGQNFGKIQSIREDKITIVEVVEDTYGNWTFRNAE
LPLSSTSDNNANQTNN

Nucleotide


Download         Length: 531 bp        

>NTDB_id=651854 LVJ86_RS02250 WP_047760727.1 508993..509523(-) (pilP) [Neisseria arctica strain KH1503]
ATGAAAATTAAACTTTTACTCCCTTGCTTCATTATATTGACTGCTTGTTCTCCTAAGCATGAAGATTTACATCAATGGAT
GGAAGATACCCAAAAACAAGCCAAAGCAAGCATCCGACCTTTTGAAGCACCGACTGTTAATCCGCCACAACCCTATAATC
CTCCTACTTATACGGGACTAAATGCTTTTGATAGCAAACGTTTAAACGCAGCCAATCAAGGAACCAATGCGCCTAACACA
AACAGACCCAAAGAAGTATTGGAAGCTTTCAGTCTAGAAAACCTCCGTTATGTCGGCAGACTGACTAAGAACGGCAGTAC
ATCAGGTTTTGTTGAGGCAGATGGTCATGTTTATACGGTTCGCCCTGGTAACTATATCGGGCAAAATTTCGGTAAAATTC
AATCTATTCGTGAAGACAAAATCACAATTGTGGAAGTTGTAGAAGATACTTACGGCAACTGGACCTTTCGTAATGCCGAG
CTACCTCTCAGCAGCACATCGGACAACAACGCCAACCAAACAAATAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

53.179

98.295

0.523