Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LVJ88_RS11025 Genome accession   NZ_CP091509
Coordinates   2365290..2367452 (-) Length   720 a.a.
NCBI ID   WP_085417912.1    Uniprot ID   -
Organism   Neisseria dumasiana strain LMG 30012     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2360290..2372452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS11005 (LVJ88_11005) - 2361918..2362358 (-) 441 WP_085417885.1 hypothetical protein -
  LVJ88_RS11010 (LVJ88_11010) - 2362371..2363171 (-) 801 WP_085417884.1 NUDIX domain-containing protein -
  LVJ88_RS11015 (LVJ88_11015) aroB 2363449..2364528 (-) 1080 WP_085417883.1 3-dehydroquinate synthase -
  LVJ88_RS11020 (LVJ88_11020) - 2364686..2365231 (-) 546 WP_085355646.1 shikimate kinase -
  LVJ88_RS11025 (LVJ88_11025) pilQ 2365290..2367452 (-) 2163 WP_085417912.1 type IV pilus secretin PilQ Machinery gene
  LVJ88_RS11030 (LVJ88_11030) pilP 2367466..2367999 (-) 534 WP_054599535.1 pilus assembly protein PilP Machinery gene
  LVJ88_RS11035 (LVJ88_11035) pilO 2368017..2368661 (-) 645 WP_054599534.1 type 4a pilus biogenesis protein PilO -
  LVJ88_RS11040 (LVJ88_11040) - 2368663..2369277 (-) 615 WP_085417882.1 PilN domain-containing protein -
  LVJ88_RS11045 (LVJ88_11045) pilM 2369279..2370376 (-) 1098 WP_054599532.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 720 a.a.        Molecular weight: 78727.36 Da        Isoelectric Point: 9.8366

>NTDB_id=651837 LVJ88_RS11025 WP_085417912.1 2365290..2367452(-) (pilQ) [Neisseria dumasiana strain LMG 30012]
MNSRNITKILSAITLGFAVQTAYSGNITDINVSSLPDNQKIIKIKFDKDVTSPRGFVTTTPARIALDFSGTSIQLPQPVL
EYADPLLNQITAAQNDDRARILLGLNKASQYNTEIKGNEVWVYISEANNKTSNTAPLQRNAAPMPAPVATPARQEQIAAS
ANIDFRKGTRNSGIVELNASSFSGEPEIKKQSDRIIITLKNYPLPTQAQRSLDVADFNTPVRNVTIKRIGNNTQLIIRNQ
GSWDVRTQGAHGRYSFEISQKANIAAQGLANTPNKSFNGRKISLDFQDVEVRTILQILAKESGMNIVASDTVNGKMTLSL
KDVPWDQALDLVMQARNLDMRRQGNIINVAPREELLAKDKATLQAQKEIDDLGPLLSQTFQLKYKNVEEFRKILRLDESG
NNSDRNSLLSGRGSALIDPATNTLIITDNRHVIHKFQKLIEELDVPTRQVMVEARIVEAEDSFSRNIGVKFGYNAVKGRN
TWGSNLNNALSNHSTKVDNNRTITNHILSGANTVPTTKPLEFSPNISLPVSAATSSIALVRALSSGALGLELAAMQEQGR
GKIISNPRVLTQDRKEATIESGSEIPYEEATSSGATSITFKKAVLGLTVTPNITPDGQVIMTVKINKDSPSDCISGGVTT
KCISTKQLQTQAMVEDGGTLIVGGIYEEENGNTVAKVPLLGDIPVVGNLFKSRTRSEKRRELLIFITPRIMDNVGSNLRY

Nucleotide


Download         Length: 2163 bp        

>NTDB_id=651837 LVJ88_RS11025 WP_085417912.1 2365290..2367452(-) (pilQ) [Neisseria dumasiana strain LMG 30012]
ATGAACTCACGCAACATTACAAAGATTCTTTCAGCCATTACTCTCGGCTTTGCCGTTCAGACGGCATATTCGGGCAATAT
TACCGATATCAACGTATCTTCTTTGCCTGACAATCAGAAAATTATCAAAATCAAATTTGATAAAGACGTTACATCTCCCC
GCGGTTTTGTAACCACTACGCCTGCCCGCATTGCACTTGACTTCAGCGGCACGTCTATCCAATTACCCCAACCTGTTTTG
GAGTACGCCGATCCGCTGTTAAACCAAATTACAGCGGCACAAAATGACGACCGTGCCCGTATCCTTTTGGGGCTGAATAA
GGCCAGCCAATACAATACCGAAATCAAAGGCAACGAAGTTTGGGTATACATCAGCGAAGCTAATAATAAAACCAGCAATA
CCGCGCCTTTGCAAAGAAACGCAGCACCAATGCCGGCTCCCGTTGCTACACCTGCTCGCCAAGAACAGATTGCGGCTTCA
GCCAACATTGATTTCCGTAAAGGTACCCGCAACTCCGGTATCGTAGAGTTGAATGCTTCTTCTTTCAGCGGCGAACCTGA
AATTAAGAAACAAAGCGACAGAATCATCATTACGTTGAAAAACTATCCATTGCCGACACAGGCACAGCGTAGTTTGGATG
TTGCCGATTTCAACACCCCGGTACGCAACGTAACCATCAAACGCATTGGTAACAACACCCAACTGATCATCCGTAATCAA
GGCAGCTGGGATGTACGCACCCAAGGAGCACATGGCCGTTACAGTTTCGAAATCAGCCAAAAAGCCAATATTGCTGCCCA
AGGCTTAGCCAATACGCCAAATAAATCGTTTAATGGACGAAAAATTTCTTTGGATTTCCAAGATGTGGAGGTGCGAACCA
TTCTCCAAATTTTGGCTAAAGAATCAGGCATGAATATCGTTGCCAGCGATACTGTGAATGGCAAAATGACTTTATCGCTC
AAAGATGTGCCTTGGGATCAGGCACTTGATTTAGTGATGCAAGCTCGTAATTTGGACATGCGCCGTCAAGGCAACATCAT
CAACGTTGCCCCGCGTGAAGAATTATTGGCTAAAGATAAAGCAACCTTGCAAGCCCAGAAAGAAATTGATGATTTGGGTC
CGCTGTTGTCTCAAACTTTCCAACTGAAATACAAAAACGTAGAAGAATTCCGTAAAATTCTGCGTCTTGACGAAAGCGGC
AATAATAGCGACCGTAACAGCCTGCTGAGCGGAAGAGGCAGCGCGCTGATCGACCCGGCTACCAATACCCTAATCATTAC
CGATAACCGCCATGTTATTCATAAGTTCCAAAAACTGATTGAAGAATTAGACGTACCGACACGTCAGGTTATGGTAGAAG
CACGCATTGTGGAAGCAGAAGACTCTTTCTCGCGCAACATCGGTGTAAAATTCGGTTACAACGCTGTCAAAGGCCGTAAC
ACTTGGGGTTCCAACCTTAACAATGCACTAAGCAACCACAGCACTAAAGTAGATAACAACCGTACAATAACCAACCATAT
TTTGAGCGGTGCAAATACCGTCCCTACGACTAAACCGTTAGAGTTCTCTCCCAACATCAGTTTACCGGTTTCAGCTGCCA
CCTCAAGTATTGCACTGGTTCGTGCACTTTCTTCAGGCGCATTGGGTTTGGAGTTGGCTGCAATGCAGGAACAGGGTAGG
GGCAAAATTATTTCCAACCCGCGCGTTTTAACGCAAGACCGTAAAGAAGCCACGATTGAGTCGGGCTCTGAAATCCCCTA
TGAAGAGGCAACTTCAAGCGGCGCTACTTCCATTACCTTCAAAAAAGCGGTGTTGGGTTTAACCGTTACGCCCAATATCA
CCCCCGACGGGCAGGTAATCATGACGGTTAAAATCAATAAAGACAGCCCGTCCGACTGTATTTCCGGCGGTGTAACAACC
AAGTGTATCAGCACCAAACAGCTTCAAACCCAAGCAATGGTTGAAGATGGCGGCACTTTGATTGTCGGCGGTATTTACGA
AGAAGAAAACGGTAATACTGTAGCTAAAGTACCCTTGCTGGGCGATATTCCCGTTGTGGGCAACCTGTTTAAATCACGCA
CCCGCAGCGAAAAACGCCGTGAGTTGCTGATTTTCATCACTCCGCGAATTATGGACAACGTAGGCAGCAACTTACGCTAC
TAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(305-349)

Bacterial type II and III secretion system protein (Secretin)

(554-712)

Bacterial type II/III secretion system short domain (Secretin_N)

(378-449)

AMIN domain (AMIN)

(37-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

57.015

100

0.621
  pilQ Neisseria gonorrhoeae strain FA1090

59.732

100

0.618
  pilQ Neisseria meningitidis MC58

64.362

78.333

0.504