Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LVJ88_RS11030 Genome accession   NZ_CP091509
Coordinates   2367466..2367999 (-) Length   177 a.a.
NCBI ID   WP_054599535.1    Uniprot ID   -
Organism   Neisseria dumasiana strain LMG 30012     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2362466..2372999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS11015 (LVJ88_11015) aroB 2363449..2364528 (-) 1080 WP_085417883.1 3-dehydroquinate synthase -
  LVJ88_RS11020 (LVJ88_11020) - 2364686..2365231 (-) 546 WP_085355646.1 shikimate kinase -
  LVJ88_RS11025 (LVJ88_11025) pilQ 2365290..2367452 (-) 2163 WP_085417912.1 type IV pilus secretin PilQ Machinery gene
  LVJ88_RS11030 (LVJ88_11030) pilP 2367466..2367999 (-) 534 WP_054599535.1 pilus assembly protein PilP Machinery gene
  LVJ88_RS11035 (LVJ88_11035) pilO 2368017..2368661 (-) 645 WP_054599534.1 type 4a pilus biogenesis protein PilO -
  LVJ88_RS11040 (LVJ88_11040) - 2368663..2369277 (-) 615 WP_085417882.1 PilN domain-containing protein -
  LVJ88_RS11045 (LVJ88_11045) pilM 2369279..2370376 (-) 1098 WP_054599532.1 type IV pilus assembly protein PilM -
  LVJ88_RS11050 (LVJ88_11050) - 2370527..2372986 (+) 2460 WP_085417881.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19289.64 Da        Isoelectric Point: 9.1923

>NTDB_id=651838 LVJ88_RS11030 WP_054599535.1 2367466..2367999(-) (pilP) [Neisseria dumasiana strain LMG 30012]
MKKTLLLAGILAVSACTSSHDDLTKWMRDTRQQAKSKIIPFEAPAAIQAKNYTAPNFSGLHAFDSKRLVAMQQGANAPNN
NRAKEVLESYSLENLKYVGSLTKGKQTSGYVEANGHVYTVLPGNYIGQNHGRIQSITADKILITELVEDSYGNWAYRKAE
LPLSGSDNGSDAAQNNN

Nucleotide


Download         Length: 534 bp        

>NTDB_id=651838 LVJ88_RS11030 WP_054599535.1 2367466..2367999(-) (pilP) [Neisseria dumasiana strain LMG 30012]
ATGAAAAAAACACTACTACTCGCAGGCATATTGGCTGTTTCGGCCTGCACATCTTCACACGACGATCTAACCAAATGGAT
GCGAGATACCCGCCAACAGGCCAAATCAAAAATCATTCCTTTTGAAGCACCTGCCGCTATCCAAGCAAAAAACTATACTG
CTCCGAATTTTAGCGGACTTCATGCCTTCGACAGCAAAAGGCTGGTTGCCATGCAGCAAGGTGCAAACGCACCCAATAAT
AACCGGGCAAAAGAAGTTCTCGAAAGCTACAGCCTTGAAAATCTGAAATATGTGGGCAGCCTGACTAAAGGAAAACAAAC
TTCAGGCTATGTTGAAGCCAATGGCCATGTTTACACTGTCCTTCCCGGCAACTATATCGGGCAAAATCACGGTCGCATCC
AATCGATCACGGCAGACAAGATTTTGATTACCGAACTGGTTGAAGACAGTTATGGAAATTGGGCATACCGTAAAGCAGAA
CTACCATTGAGCGGCTCAGACAACGGCAGCGATGCAGCTCAAAACAACAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

51.462

96.61

0.497