Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA05_RS30400 Genome accession   NZ_CP108032
Coordinates   6810447..6811118 (-) Length   223 a.a.
NCBI ID   WP_313943068.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00306     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6805447..6816118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA05_RS30370 (OHA05_30380) - 6806432..6806845 (+) 414 WP_313943074.1 hypothetical protein -
  OHA05_RS30375 (OHA05_30385) - 6806842..6807270 (+) 429 WP_328862273.1 hypothetical protein -
  OHA05_RS30380 (OHA05_30390) - 6807399..6807959 (+) 561 WP_313943072.1 cysteine hydrolase family protein -
  OHA05_RS30385 (OHA05_30395) - 6808102..6808659 (-) 558 WP_328862274.1 GNAT family protein -
  OHA05_RS30390 (OHA05_30400) - 6808824..6809282 (+) 459 WP_328862275.1 hypothetical protein -
  OHA05_RS30395 (OHA05_30405) - 6809410..6810024 (-) 615 WP_328862276.1 dihydrofolate reductase family protein -
  OHA05_RS30400 (OHA05_30410) vraR 6810447..6811118 (-) 672 WP_313943068.1 response regulator transcription factor Regulator
  OHA05_RS30405 (OHA05_30415) - 6811115..6812452 (-) 1338 WP_328862277.1 histidine kinase -
  OHA05_RS30410 (OHA05_30420) - 6812463..6813641 (-) 1179 WP_328862278.1 acyltransferase -
  OHA05_RS30415 (OHA05_30425) - 6813634..6814605 (-) 972 WP_328862279.1 alpha/beta hydrolase -
  OHA05_RS30420 (OHA05_30430) - 6814794..6815678 (-) 885 WP_328862280.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23729.58 Da        Isoelectric Point: 5.1055

>NTDB_id=651798 OHA05_RS30400 WP_313943068.1 6810447..6811118(-) (vraR) [Streptomyces sp. NBC_00306]
MTIRVLIADDQMMVRQGFTVLLNAEPGIEVVGQAVDGLDAIAKVAELTPDVVLMDIRMPGLGGIEATGRITGPAGDPAVK
VLVLTTFDLDEYVYEALRAGASGFLLKDASAAELAQAVRVVAAGDALLAPNITKRLIAEFSRVTRTHRAPLMERVGALTE
RETEVLALIAQGLSNAEIATRLVVAEQTVKTHVGRILLKLGLRDRTQAAVYAYETGVVRPAGY

Nucleotide


Download         Length: 672 bp        

>NTDB_id=651798 OHA05_RS30400 WP_313943068.1 6810447..6811118(-) (vraR) [Streptomyces sp. NBC_00306]
ATGACCATCCGCGTGCTGATCGCGGACGACCAGATGATGGTGCGCCAGGGCTTCACCGTGCTGCTGAACGCCGAGCCGGG
CATCGAGGTCGTCGGCCAGGCCGTGGACGGCCTCGACGCGATCGCCAAGGTCGCCGAACTGACCCCCGACGTCGTCCTCA
TGGACATCCGTATGCCGGGACTGGGCGGGATCGAGGCCACGGGCCGCATCACCGGGCCCGCCGGCGACCCGGCCGTGAAG
GTGCTGGTCCTCACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGCGCGGGGGCCTCCGGCTTTCTGCTCAA
GGACGCGTCGGCCGCCGAGCTGGCGCAGGCGGTACGTGTGGTGGCGGCAGGTGACGCGCTGCTCGCACCGAACATCACGA
AGCGGCTGATCGCCGAGTTCTCGCGGGTGACCCGCACCCACCGCGCTCCGCTCATGGAGCGCGTCGGAGCTCTGACGGAA
CGCGAGACCGAGGTCCTGGCCCTGATCGCGCAAGGGCTGTCGAACGCCGAGATCGCGACCCGACTGGTCGTGGCGGAGCA
GACCGTGAAGACCCATGTCGGCCGGATCCTGCTGAAGCTGGGTCTGCGCGACCGTACGCAGGCGGCGGTGTACGCGTACG
AAACGGGCGTCGTCCGCCCGGCCGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-119)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.749

98.206

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

40.889

100

0.413