Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LVJ83_RS10485 Genome accession   NZ_CP091508
Coordinates   2280659..2280949 (-) Length   96 a.a.
NCBI ID   WP_244784473.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2275659..2285949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS10460 (LVJ83_10460) pgeF 2276139..2276936 (-) 798 WP_244784463.1 peptidoglycan editing factor PgeF -
  LVJ83_RS10465 (LVJ83_10465) rluD 2277352..2278473 (-) 1122 WP_244784465.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LVJ83_RS10470 (LVJ83_10470) comL 2278472..2279275 (+) 804 WP_244784467.1 outer membrane protein assembly factor BamD Machinery gene
  LVJ83_RS10475 (LVJ83_10475) - 2279357..2279896 (-) 540 WP_244784469.1 IS630 family transposase -
  LVJ83_RS10480 (LVJ83_10480) - 2279877..2280194 (-) 318 WP_244784471.1 IS630 transposase-related protein -
  LVJ83_RS10485 (LVJ83_10485) comE 2280659..2280949 (-) 291 WP_244784473.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10052.70 Da        Isoelectric Point: 10.5259

>NTDB_id=651798 LVJ83_RS10485 WP_244784473.1 2280659..2280949(-) (comE) [Uruburuella testudinis strain CCUG 63373m]
MKKLIWGALALISTGFSLAAVNINTAGEEELKALPGIGPSKAAAIVEYRSRNGNFKSVEELKNVKGIGDGIYNRLKDEAS
VSGAAAKKAKPALKKP

Nucleotide


Download         Length: 291 bp        

>NTDB_id=651798 LVJ83_RS10485 WP_244784473.1 2280659..2280949(-) (comE) [Uruburuella testudinis strain CCUG 63373m]
ATGAAAAAACTGATTTGGGGCGCACTGGCGCTGATAAGCACCGGCTTCTCGCTGGCGGCGGTCAACATCAACACCGCCGG
GGAAGAAGAGCTCAAAGCCCTGCCGGGCATCGGCCCCTCGAAAGCGGCGGCGATTGTAGAGTACCGCAGCCGCAACGGCA
ACTTCAAAAGTGTGGAGGAGCTGAAGAACGTGAAGGGGATCGGAGACGGTATTTACAACCGTCTGAAGGATGAGGCTTCG
GTATCGGGGGCGGCGGCGAAGAAGGCCAAGCCTGCGCTTAAGAAGCCGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58.511

97.917

0.573
  comE Neisseria gonorrhoeae MS11

58.511

97.917

0.573
  comE Neisseria gonorrhoeae MS11

58.511

97.917

0.573
  comE Neisseria gonorrhoeae MS11

58.511

97.917

0.573
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.617

84.375

0.427