Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LVJ83_RS10470 Genome accession   NZ_CP091508
Coordinates   2278472..2279275 (+) Length   267 a.a.
NCBI ID   WP_244784467.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2273472..2284275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS10455 (LVJ83_10455) brnQ 2274396..2275745 (-) 1350 WP_280515212.1 branched-chain amino acid transport system II carrier protein -
  LVJ83_RS10460 (LVJ83_10460) pgeF 2276139..2276936 (-) 798 WP_244784463.1 peptidoglycan editing factor PgeF -
  LVJ83_RS10465 (LVJ83_10465) rluD 2277352..2278473 (-) 1122 WP_244784465.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LVJ83_RS10470 (LVJ83_10470) comL 2278472..2279275 (+) 804 WP_244784467.1 outer membrane protein assembly factor BamD Machinery gene
  LVJ83_RS10475 (LVJ83_10475) - 2279357..2279896 (-) 540 WP_244784469.1 IS630 family transposase -
  LVJ83_RS10480 (LVJ83_10480) - 2279877..2280194 (-) 318 WP_244784471.1 IS630 transposase-related protein -
  LVJ83_RS10485 (LVJ83_10485) comE 2280659..2280949 (-) 291 WP_244784473.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31019.88 Da        Isoelectric Point: 6.7325

>NTDB_id=651797 LVJ83_RS10470 WP_244784467.1 2278472..2279275(+) (comL) [Uruburuella testudinis strain CCUG 63373m]
MKKILLVVTLGFALSGCANTGTVDKDAQITQDWTVDRLYTEAQDELNSNNYTRAIKLYEILESRFPNGRHAQQAQLDTAY
AYYKDDEPEKALAAIERFQRIYPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYHAFAQLVERYPDS
RYAPDASERMAKLVDALGGNEIAVARYYINRGAYLAAANRAQKVVEQYQNTRFVEEALAIMELSYTRMNKPQLAEDTRRI
LAQNFPNSPYLQKPWQANSMPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=651797 LVJ83_RS10470 WP_244784467.1 2278472..2279275(+) (comL) [Uruburuella testudinis strain CCUG 63373m]
ATGAAAAAAATTCTTTTAGTAGTAACCTTAGGTTTCGCCCTGAGCGGTTGTGCCAACACCGGCACCGTCGATAAAGACGC
CCAAATCACCCAAGATTGGACAGTGGACCGTCTCTACACCGAAGCGCAAGACGAATTAAACAGCAACAATTATACGCGAG
CCATCAAGTTATACGAAATATTGGAATCACGGTTCCCCAACGGCCGCCACGCGCAACAAGCCCAACTGGATACCGCTTAT
GCTTACTATAAAGATGACGAGCCGGAAAAAGCCTTGGCTGCAATCGAGCGGTTCCAACGCATTTACCCGCAACACCCGAA
TATGGATTATGCCCTATACCTGAAAGGCTTGGTATTGTTTAATGAAGACCAGTCATTCTTAAACAAACTGGCTTCGCAAG
ACTGGTCCGACCGCGACCCTAAAGCCAACCGTGACGCTTATCATGCATTTGCCCAATTGGTGGAACGCTACCCCGACAGC
CGCTATGCACCGGATGCCAGCGAACGCATGGCCAAACTTGTTGATGCTTTGGGCGGCAATGAAATCGCCGTTGCCCGCTA
CTATATCAATCGCGGCGCCTATCTCGCAGCAGCCAACCGCGCACAAAAAGTGGTCGAACAATATCAAAACACCCGCTTTG
TGGAAGAAGCTCTGGCCATTATGGAGTTATCATACACCCGTATGAACAAACCGCAATTGGCCGAAGATACCCGTCGCATT
CTGGCGCAAAACTTCCCCAACAGCCCATATCTCCAAAAACCGTGGCAAGCCAACAGCATGCCTTGGTGGCGCTACTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

76.316

99.625

0.76
  comL Neisseria gonorrhoeae MS11

75.94

99.625

0.757