Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LVJ83_RS04325 Genome accession   NZ_CP091508
Coordinates   955834..958020 (-) Length   728 a.a.
NCBI ID   WP_244786663.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 950834..963020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS04310 (LVJ83_04310) - 951015..953255 (-) 2241 WP_244786656.1 bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase -
  LVJ83_RS04315 (LVJ83_04315) aroB 954163..955242 (-) 1080 WP_244786658.1 3-dehydroquinate synthase -
  LVJ83_RS04320 (LVJ83_04320) - 955248..955781 (-) 534 WP_244786660.1 shikimate kinase -
  LVJ83_RS04325 (LVJ83_04325) pilQ 955834..958020 (-) 2187 WP_244786663.1 type IV pilus secretin PilQ Machinery gene
  LVJ83_RS04330 (LVJ83_04330) pilP 958044..958571 (-) 528 WP_244786665.1 pilus assembly protein PilP Machinery gene
  LVJ83_RS04335 (LVJ83_04335) pilO 958591..959220 (-) 630 WP_244786667.1 type 4a pilus biogenesis protein PilO -
  LVJ83_RS04340 (LVJ83_04340) pilN 959223..959804 (-) 582 WP_244786669.1 PilN domain-containing protein Machinery gene
  LVJ83_RS04345 (LVJ83_04345) pilM 959808..960905 (-) 1098 WP_244786671.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 728 a.a.        Molecular weight: 79094.52 Da        Isoelectric Point: 9.4343

>NTDB_id=651777 LVJ83_RS04325 WP_244786663.1 955834..958020(-) (pilQ) [Uruburuella testudinis strain CCUG 63373m]
MKSRNIKTLSAAILALAVQTAFAGNITDINVSTLPDNQKIIKITFDKEVVSPSGFITTTPARIALDFSNTNIQLAQPVLE
YADPLLSQITAAQNNDRARIVLGLNKAGQYNTEIKGNEVWVYVSESVEQTGSAAAIYNPGRIDSRVVSSEPAGQSPAPRK
TQTVSSANIDFRKGARNSGIIELTAPSFSGEPDIKQQSDRVVITLKNHPLPTQAQRSLDVADFNTPVRNITMKRIGNNTQ
VVIRNQGSWDIRTQSAGGRFSFEISPKVATAAPGLRSNANRSFSGRRISLDFQDIEVRTILQILAKESGTNIVASDSVNG
KMTLTLKDVPWDQALDLVMQARNLDMRRQGNIINVAPREELLAKDKATLQAQKEIEELGPLYSQTFQLKYKNVEEFRKIL
RLEDGNSSNSGNSRNTLLSERGSALIDPSTNTLIITDNIGVIQKFQKLIDELDVATRQVMVEARIVEAEDGFSRDIGVKF
GYQGVSGRNSWGSDWSNAADNFGARNRANLANLNAARSGSTTITAPTFEMNPNINLPVSSATSSIALVRAIGSGALGLEL
AAMQQQNKGKIISNPRVLTQDRREAVIESGQEIPYEEATSSGATSITFKKAVLGLTVTPNITPDGQIIMDVKINKDNPVD
CTSGGVATLCISTKNLRTQAMVEDGGTLIVGGIYEESNSNIVNKVPLLGDIPLVGNLFKSRARTETRRELLIFITPRIMD
SMGSTLRY

Nucleotide


Download         Length: 2187 bp        

>NTDB_id=651777 LVJ83_RS04325 WP_244786663.1 955834..958020(-) (pilQ) [Uruburuella testudinis strain CCUG 63373m]
ATGAAATCACGCAACATTAAAACGCTTTCCGCCGCTATATTGGCGTTGGCCGTACAAACAGCTTTCGCAGGCAATATTAC
CGATATCAACGTATCCACCCTGCCCGATAACCAAAAAATTATCAAAATCACCTTTGATAAAGAAGTTGTTTCGCCAAGCG
GCTTTATCACCACCACACCGGCGCGGATTGCGCTGGATTTTTCCAATACCAATATCCAGCTTGCCCAACCGGTGCTGGAA
TATGCCGATCCGCTGCTGAGCCAGATTACCGCCGCGCAAAACAATGACCGTGCCCGCATCGTCTTGGGCTTGAACAAAGC
CGGCCAATACAACACCGAAATCAAAGGCAATGAAGTTTGGGTCTATGTGAGCGAATCGGTCGAACAAACCGGCAGCGCCG
CCGCCATCTACAACCCCGGCCGCATCGATAGTCGTGTGGTCTCCAGCGAGCCGGCCGGCCAATCGCCGGCACCACGTAAG
ACACAAACCGTCAGCAGCGCCAACATTGATTTTCGAAAAGGCGCGCGCAATTCCGGCATTATCGAGCTGACTGCGCCCTC
TTTTTCCGGCGAACCCGATATCAAACAGCAAAGCGACCGCGTGGTGATTACGCTGAAAAACCACCCATTGCCGACACAAG
CCCAACGCAGCCTGGATGTCGCTGACTTCAATACCCCCGTACGCAACATCACCATGAAACGTATCGGCAACAACACCCAA
GTGGTTATCCGCAACCAAGGCAGTTGGGACATTCGCACCCAATCGGCAGGCGGCCGTTTCAGCTTTGAAATCAGCCCTAA
AGTTGCCACTGCCGCCCCCGGTTTGCGCAGCAATGCCAACCGTTCATTCAGTGGCCGCCGCATTTCGCTCGATTTCCAAG
ACATCGAAGTGCGCACCATTTTGCAGATTCTGGCCAAAGAATCCGGCACCAATATCGTGGCCAGCGACAGCGTAAACGGC
AAAATGACATTAACCTTAAAAGATGTACCTTGGGATCAAGCGCTTGATTTGGTGATGCAGGCACGCAATCTCGACATGCG
CCGCCAAGGCAATATCATCAATGTTGCCCCCCGTGAAGAATTGCTGGCAAAAGACAAAGCCACTTTGCAGGCACAAAAAG
AAATTGAAGAGCTGGGCCCGCTTTATTCACAAACCTTCCAATTAAAATACAAAAATGTGGAAGAATTCCGCAAAATCCTG
CGCCTTGAAGACGGCAACAGCAGCAATAGCGGCAACAGCCGCAACACCTTGTTGAGCGAGCGCGGCAGCGCATTAATCGA
CCCGTCAACCAACACCTTGATTATTACCGACAACATCGGTGTGATTCAAAAATTTCAAAAGCTGATTGATGAATTGGATG
TCGCCACCCGCCAAGTGATGGTAGAAGCGCGTATTGTCGAAGCCGAAGACGGCTTCTCACGCGACATCGGCGTGAAATTC
GGTTATCAGGGCGTTAGCGGCCGCAACAGCTGGGGTTCAGACTGGTCGAATGCTGCTGACAACTTCGGTGCACGAAACAG
AGCCAACCTGGCCAATCTCAACGCAGCACGCTCCGGCAGCACAACGATTACCGCGCCCACTTTTGAGATGAATCCGAATA
TCAACCTTCCCGTTTCCAGCGCTACTTCAAGCATTGCCCTGGTTCGCGCCATCGGATCCGGCGCATTGGGTTTGGAGTTG
GCGGCCATGCAGCAGCAAAACAAAGGTAAAATCATCTCCAACCCTCGTGTGCTTACACAAGACCGCAGAGAAGCCGTGAT
TGAATCAGGCCAGGAAATTCCGTACGAAGAAGCCACCTCCAGCGGCGCCACTTCGATTACCTTCAAAAAAGCCGTCTTAG
GCCTGACCGTTACCCCCAACATCACCCCCGACGGCCAGATTATTATGGATGTTAAAATCAACAAGGATAATCCGGTTGAC
TGCACCAGCGGCGGCGTTGCCACCTTGTGTATCAGCACCAAAAATCTGCGCACTCAAGCCATGGTTGAAGATGGCGGCAC
ACTGATTGTCGGCGGTATTTATGAAGAAAGTAACAGCAATATCGTCAACAAAGTGCCTCTGCTGGGCGATATTCCGCTTG
TCGGCAACCTGTTCAAATCGCGCGCTCGAACAGAAACCCGCCGCGAATTACTGATTTTCATCACCCCACGCATTATGGAC
AGCATGGGTAGCACGCTGCGCTATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(36-114)

Bacterial type II and III secretion system protein (Secretin)

(562-720)

Secretin and TonB N terminus short domain (STN)

(311-355)

Bacterial type II/III secretion system short domain (Secretin_N)

(384-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

56.313

100

0.613
  pilQ Neisseria gonorrhoeae strain FA1090

59.06

100

0.604
  pilQ Neisseria meningitidis MC58

63.363

77.61

0.492