Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LVJ83_RS04330 Genome accession   NZ_CP091508
Coordinates   958044..958571 (-) Length   175 a.a.
NCBI ID   WP_244786665.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 953044..963571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS04315 (LVJ83_04315) aroB 954163..955242 (-) 1080 WP_244786658.1 3-dehydroquinate synthase -
  LVJ83_RS04320 (LVJ83_04320) - 955248..955781 (-) 534 WP_244786660.1 shikimate kinase -
  LVJ83_RS04325 (LVJ83_04325) pilQ 955834..958020 (-) 2187 WP_244786663.1 type IV pilus secretin PilQ Machinery gene
  LVJ83_RS04330 (LVJ83_04330) pilP 958044..958571 (-) 528 WP_244786665.1 pilus assembly protein PilP Machinery gene
  LVJ83_RS04335 (LVJ83_04335) pilO 958591..959220 (-) 630 WP_244786667.1 type 4a pilus biogenesis protein PilO -
  LVJ83_RS04340 (LVJ83_04340) pilN 959223..959804 (-) 582 WP_244786669.1 PilN domain-containing protein Machinery gene
  LVJ83_RS04345 (LVJ83_04345) pilM 959808..960905 (-) 1098 WP_244786671.1 type IV pilus assembly protein PilM -
  LVJ83_RS04350 (LVJ83_04350) - 961056..963449 (+) 2394 WP_342345081.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19204.50 Da        Isoelectric Point: 6.0842

>NTDB_id=651778 LVJ83_RS04330 WP_244786665.1 958044..958571(-) (pilP) [Uruburuella testudinis strain CCUG 63373m]
MKYTILLAGLLALNACTPAHEDLREWMNNTRTQAKAHALSFEPPAIHPAQTYMPPNYSGLNAFDSKRLNVGQQGANAPNM
SRPKEILEGFSLENLKYVGTLKSGNRISGYIEADGHVYTVRAGNYIGQNFGQIQSITDDKIVLTEVVEDTYGNWVFRNAE
LPLSSGAADTANTQN

Nucleotide


Download         Length: 528 bp        

>NTDB_id=651778 LVJ83_RS04330 WP_244786665.1 958044..958571(-) (pilP) [Uruburuella testudinis strain CCUG 63373m]
ATGAAATATACGATATTACTCGCAGGCTTATTAGCATTAAATGCCTGCACCCCCGCCCATGAAGATTTGCGCGAGTGGAT
GAACAATACGCGCACACAAGCCAAAGCACATGCTTTATCGTTTGAGCCGCCCGCCATCCACCCCGCCCAAACCTACATGC
CGCCCAACTACTCCGGCCTGAATGCTTTTGACAGCAAACGGCTCAATGTCGGCCAACAAGGTGCCAACGCGCCCAATATG
AGCCGCCCGAAAGAAATCCTCGAAGGTTTCAGCCTCGAAAACCTGAAATACGTCGGCACGCTGAAAAGCGGCAACCGCAT
CTCAGGCTATATTGAAGCAGACGGCCATGTTTATACCGTCAGAGCGGGCAACTATATCGGCCAAAACTTCGGCCAAATCC
AGTCCATTACAGACGACAAAATCGTGCTGACCGAAGTTGTGGAAGACACCTACGGCAACTGGGTTTTCCGCAATGCAGAA
TTACCGTTGAGCAGCGGTGCCGCAGACACCGCAAACACGCAAAACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

54.706

97.143

0.531