Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LVJ78_RS08635 Genome accession   NZ_CP091507
Coordinates   1898571..1898858 (-) Length   95 a.a.
NCBI ID   WP_244802566.1    Uniprot ID   A0AAE9GXA7
Organism   Uruburuella suis strain 1258/02     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1893571..1903858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS08600 (LVJ78_08600) iscR 1894658..1895104 (+) 447 WP_132954501.1 Fe-S cluster assembly transcriptional regulator IscR -
  LVJ78_RS08605 (LVJ78_08605) - 1895144..1896358 (+) 1215 WP_132954500.1 IscS subfamily cysteine desulfurase -
  LVJ78_RS08610 (LVJ78_08610) iscU 1896479..1896862 (+) 384 WP_132954499.1 Fe-S cluster assembly scaffold IscU -
  LVJ78_RS08615 (LVJ78_08615) - 1896863..1897129 (+) 267 WP_132954498.1 DksA/TraR family C4-type zinc finger protein -
  LVJ78_RS08620 (LVJ78_08620) - 1897140..1897394 (+) 255 WP_132954497.1 recombinase RecA -
  LVJ78_RS08625 (LVJ78_08625) iscA 1897454..1897774 (+) 321 WP_132954496.1 iron-sulfur cluster assembly protein IscA -
  LVJ78_RS08630 (LVJ78_08630) hscB 1897829..1898329 (+) 501 WP_132954495.1 Fe-S protein assembly co-chaperone HscB -
  LVJ78_RS08635 (LVJ78_08635) comE 1898571..1898858 (-) 288 WP_244802566.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10027.75 Da        Isoelectric Point: 10.3931

>NTDB_id=651753 LVJ78_RS08635 WP_244802566.1 1898571..1898858(-) (comE) [Uruburuella suis strain 1258/02]
MKKLILGALALLSMSWALATVNINTAGADELKALPGIGPAKAEAIVEYRKQHGNFKSVEELKNVKGIGDGIYNRLKDEAT
VSGAPAKKAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=651753 LVJ78_RS08635 WP_244802566.1 1898571..1898858(-) (comE) [Uruburuella suis strain 1258/02]
ATGAAAAAACTGATCTTAGGCGCATTGGCTCTGCTGAGCATGAGCTGGGCATTGGCGACGGTGAACATCAACACTGCCGG
TGCGGACGAACTCAAAGCGCTGCCGGGCATCGGCCCGGCGAAGGCAGAGGCGATTGTGGAATACCGCAAACAGCACGGCA
ATTTCAAAAGCGTGGAAGAGCTGAAGAATGTGAAGGGCATTGGCGACGGTATCTACAACCGCCTGAAGGATGAGGCAACG
GTATCGGGCGCGCCTGCGAAGAAGGCGCAGCCGGCGGTGAAGAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

54.545

100

0.568
  comE Neisseria gonorrhoeae MS11

54.545

100

0.568
  comE Neisseria gonorrhoeae MS11

54.545

100

0.568
  comE Neisseria gonorrhoeae MS11

54.545

100

0.568
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.617

85.263

0.432
  comEA Vibrio campbellii strain DS40M4

42.529

91.579

0.389