Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LVJ78_RS02410 Genome accession   NZ_CP091507
Coordinates   539936..540223 (+) Length   95 a.a.
NCBI ID   WP_244802566.1    Uniprot ID   A0AAE9GXA7
Organism   Uruburuella suis strain 1258/02     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 534936..545223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS02410 (LVJ78_02410) comE 539936..540223 (+) 288 WP_244802566.1 helix-hairpin-helix domain-containing protein Machinery gene
  LVJ78_RS02415 (LVJ78_02415) - 540573..540899 (-) 327 WP_132954939.1 rhodanese-like domain-containing protein -
  LVJ78_RS02420 (LVJ78_02420) - 540959..541618 (-) 660 WP_132954940.1 protein-L-isoaspartate O-methyltransferase -
  LVJ78_RS02425 (LVJ78_02425) tpiA 541986..542750 (+) 765 WP_132954943.1 triose-phosphate isomerase -
  LVJ78_RS02430 (LVJ78_02430) secG 542756..543115 (+) 360 WP_132954941.1 preprotein translocase subunit SecG -
  LVJ78_RS02440 (LVJ78_02440) - 544023..545126 (+) 1104 WP_132954942.1 agmatine deiminase family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10027.75 Da        Isoelectric Point: 10.3931

>NTDB_id=651736 LVJ78_RS02410 WP_244802566.1 539936..540223(+) (comE) [Uruburuella suis strain 1258/02]
MKKLILGALALLSMSWALATVNINTAGADELKALPGIGPAKAEAIVEYRKQHGNFKSVEELKNVKGIGDGIYNRLKDEAT
VSGAPAKKAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=651736 LVJ78_RS02410 WP_244802566.1 539936..540223(+) (comE) [Uruburuella suis strain 1258/02]
ATGAAAAAACTGATCTTAGGCGCATTGGCTCTGCTGAGCATGAGCTGGGCATTGGCGACGGTGAACATCAACACTGCCGG
TGCGGACGAACTCAAAGCGCTGCCGGGCATCGGCCCGGCGAAGGCAGAGGCGATTGTGGAATACCGCAAACAGCACGGCA
ATTTCAAAAGCGTGGAAGAGCTGAAGAATGTGAAGGGCATTGGCGACGGTATCTACAACCGCCTGAAGGATGAGGCAACG
GTATCGGGCGCGCCTGCGAAGAAGGCGCAGCCGGCGGTGAAGAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

54.545

100

0.568
  comE Neisseria gonorrhoeae MS11

54.545

100

0.568
  comE Neisseria gonorrhoeae MS11

54.545

100

0.568
  comE Neisseria gonorrhoeae MS11

54.545

100

0.568
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.617

85.263

0.432
  comEA Vibrio campbellii strain DS40M4

42.529

91.579

0.389