Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   L3474_RS10380 Genome accession   NZ_CP091450
Coordinates   2036418..2037080 (-) Length   220 a.a.
NCBI ID   WP_000649968.1    Uniprot ID   A0A098Z9B1
Organism   Streptococcus pneumoniae strain 3641/15     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2031418..2042080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3474_RS10355 (L3474_10285) - 2031568..2031834 (-) 267 WP_001278167.1 Veg family protein -
  L3474_RS10360 (L3474_10290) dnaB 2031836..2033188 (-) 1353 WP_000852486.1 replicative DNA helicase -
  L3474_RS10365 (L3474_10295) rplI 2033232..2033684 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  L3474_RS10370 (L3474_10300) - 2033681..2035654 (-) 1974 WP_000715111.1 DHH family phosphoesterase -
  L3474_RS10375 (L3474_10305) hpf 2035790..2036338 (-) 549 WP_000599104.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  L3474_RS10380 (L3474_10310) comFC/cflB 2036418..2037080 (-) 663 WP_000649968.1 ComF family protein Machinery gene
  L3474_RS10385 (L3474_10315) comFA/cflA 2037077..2038375 (-) 1299 WP_000867608.1 DEAD/DEAH box helicase Machinery gene
  L3474_RS10390 (L3474_10320) - 2038431..2039066 (+) 636 WP_000395746.1 YigZ family protein -
  L3474_RS10395 (L3474_10325) cysK 2039351..2040271 (+) 921 WP_000029860.1 cysteine synthase A -
  L3474_RS10400 (L3474_10330) - 2040346..2040884 (-) 539 Protein_2017 transposase -
  L3474_RS10405 (L3474_10335) - 2040857..2041165 (+) 309 Protein_2018 transposase -
  L3474_RS10410 (L3474_10340) tnpB 2041306..2041629 (-) 324 WP_000973416.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25203.05 Da        Isoelectric Point: 7.7116

>NTDB_id=651293 L3474_RS10380 WP_000649968.1 2036418..2037080(-) (comFC/cflB) [Streptococcus pneumoniae strain 3641/15]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQFWCKEGVGVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=651293 L3474_RS10380 WP_000649968.1 2036418..2037080(-) (comFC/cflB) [Streptococcus pneumoniae strain 3641/15]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAATTTTGGTGTAAAGAAGGAGTTGGAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098Z9B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae TIGR4

99.091

100

0.991
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914
  comFC/cflB Streptococcus mitis NCTC 12261

90.909

100

0.909