Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHA37_RS09830 Genome accession   NZ_CP108006
Coordinates   2225151..2225942 (+) Length   263 a.a.
NCBI ID   WP_243331797.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2220151..2230942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS09820 (OHA37_09825) - 2221113..2224016 (-) 2904 WP_266903957.1 vitamin B12-dependent ribonucleotide reductase -
  OHA37_RS09825 (OHA37_09830) nrdR 2224161..2224670 (-) 510 WP_250748823.1 transcriptional regulator NrdR -
  OHA37_RS09830 (OHA37_09835) dinR/lexA 2225151..2225942 (+) 792 WP_243331797.1 transcriptional repressor LexA Regulator
  OHA37_RS09835 (OHA37_09840) - 2226041..2228011 (-) 1971 WP_266903958.1 ATP-dependent DNA helicase -
  OHA37_RS09840 (OHA37_09845) - 2228064..2229896 (-) 1833 WP_266912635.1 IucA/IucC family siderophore biosynthesis protein -
  OHA37_RS09845 (OHA37_09850) - 2230069..2230689 (-) 621 WP_266912637.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28522.33 Da        Isoelectric Point: 7.3866

>NTDB_id=651225 OHA37_RS09830 WP_243331797.1 2225151..2225942(+) (dinR/lexA) [Streptomyces sp. NBC_00335]
MTTTADSATITAQNRSQSRLEPVHAMNDASLNPEAEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFCLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRL

Nucleotide


Download         Length: 792 bp        

>NTDB_id=651225 OHA37_RS09830 WP_243331797.1 2225151..2225942(+) (dinR/lexA) [Streptomyces sp. NBC_00335]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCATGAA
TGACGCAAGTCTGAACCCGGAGGCGGAGCCCGTACGCCCCGCACGCTCGCTGCCAGGGCGGCCTCCAGGCATCCGCGCCG
ACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATTCGCGACTCGGTGCAGCGGCGCGGCTACCCGCCG
TCGATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACCTCGTCGGTCGCGCACCAGCTGATGGCCCTGGAGCGCAA
GGGCTTCCTGCGCCGCGACCCCCACCGCCCCCGGGCGTACGAGGTGCGCGGCTCCGACCAGCCCAGCTCGCAGCCCACGG
ACACCACGGGCAAGCCCGCCGCCTCGTACGTGCCCCTGGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTCGCCGAGGAG
TCGGTGGAGGACGTGTTCCCCCTCCCCCGCCAGCTCGTGGGCGACGGAGAGCTCTTCTGCCTCAAGGTCGTCGGCGACTC
CATGATCGAGGCCGCCATCTGTGACGGCGACTGGGTCACGGTCCGTCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCG
CCGCCATGCTCGACGGCGAGGCCACGGTCAAGCGTTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAACGCC
GCCTACCAGCCGATCCCCGGCGACGAGGCCACCATCCTCGGCAAGGTCGTGGCCGTACTGCGCCGGCTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.667

79.848

0.373