Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   L3X06_RS03420 Genome accession   NZ_CP091422
Coordinates   700812..701753 (+) Length   313 a.a.
NCBI ID   WP_012027201.1    Uniprot ID   A0A2K1T0X9
Organism   Streptococcus suis strain LSM157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 695812..706753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3X06_RS03405 (L3X06_03405) - 696658..697695 (-) 1038 WP_012027206.1 3-deoxy-7-phosphoheptulonate synthase -
  L3X06_RS03410 (L3X06_03410) - 697996..698589 (-) 594 WP_012027204.1 DUF1361 domain-containing protein -
  L3X06_RS03415 (L3X06_03415) metG 698745..700748 (+) 2004 WP_012775442.1 methionine--tRNA ligase -
  L3X06_RS03420 (L3X06_03420) coiA 700812..701753 (+) 942 WP_012027201.1 competence protein CoiA Machinery gene
  L3X06_RS03425 (L3X06_03425) pepF 701984..703786 (+) 1803 WP_012027200.1 oligoendopeptidase F Regulator
  L3X06_RS03430 (L3X06_03430) - 703788..704228 (+) 441 WP_012775191.1 hypothetical protein -
  L3X06_RS03435 (L3X06_03435) - 704244..704792 (+) 549 WP_002938103.1 DUF6630 family protein -
  L3X06_RS03440 (L3X06_03440) - 704867..705586 (+) 720 WP_009910106.1 O-methyltransferase -
  L3X06_RS03445 (L3X06_03445) prsA 705647..706648 (+) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36261.73 Da        Isoelectric Point: 7.4147

>NTDB_id=651004 L3X06_RS03420 WP_012027201.1 700812..701753(+) (coiA) [Streptococcus suis strain LSM157]
MLVALDEDGQVFNVLENPAPQGSFSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYRWLVNAEQ
VELEKCLTSIGQVADLFVNNSLALEVQCSGLPISRLQLRTQAYSEAGYQVLWLLGKDLWLKERLTNLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=651004 L3X06_RS03420 WP_012027201.1 700812..701753(+) (coiA) [Streptococcus suis strain LSM157]
ATGTTAGTAGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGCAGTTTTTCCTGTCC
AGGTTGTGGAGGACTTGTCCGATACAAATCAGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAGTCCGCTCAGCACCTGTCCCTCAAGTCTTGTCTGTACAGGTGGTTAGTCAATGCCGAACAA
GTTGAACTTGAAAAATGCTTGACTAGTATAGGACAGGTCGCTGATTTATTTGTCAATAATAGTCTAGCTTTGGAAGTTCA
ATGTTCCGGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATAGTGAGGCTGGTTATCAGGTTCTTTGGTTGC
TTGGCAAGGATTTGTGGCTCAAGGAACGACTGACCAATTTGCACAAGCAATTTCTCTCTTTTAGTATGAATATGGGGTTT
CACCTCTGGGAATTGGATGATGAGAAGAAGGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCATTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTG
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTACCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K1T0X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.205

99.681

0.53
  coiA Streptococcus pneumoniae TIGR4

51.603

99.681

0.514
  coiA Streptococcus pneumoniae Rx1

51.603

99.681

0.514
  coiA Streptococcus pneumoniae D39

51.603

99.681

0.514
  coiA Streptococcus pneumoniae R6

51.603

99.681

0.514
  coiA Lactococcus lactis subsp. cremoris KW2

42.5

100

0.435