Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2Z46_RS11790 Genome accession   NZ_CP091373
Coordinates   2435680..2436498 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB21-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2430680..2441498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z46_RS11775 (L2Z46_11775) pilE 2430897..2431322 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  L2Z46_RS11780 (L2Z46_11780) pilY2 2431319..2431801 (-) 483 WP_001046416.1 type IV pilin protein Machinery gene
  L2Z46_RS11785 (L2Z46_11785) pilY1 2431814..2435668 (-) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z46_RS11790 (L2Z46_11790) pilX 2435680..2436498 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z46_RS11795 (L2Z46_11795) pilW 2436495..2437496 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  L2Z46_RS11800 (L2Z46_11800) pilV 2437497..2438057 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L2Z46_RS11805 (L2Z46_11805) fimU 2438051..2438524 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  L2Z46_RS11810 (L2Z46_11810) ispH 2438694..2439644 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z46_RS11815 (L2Z46_11815) gmk 2439767..2440396 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z46_RS11820 (L2Z46_11820) rpoZ 2440469..2440747 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z46_RS11825 (L2Z46_11825) - 2440786..2440915 (+) 130 Protein_2311 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=650775 L2Z46_RS11790 WP_000149374.1 2435680..2436498(-) (pilX) [Acinetobacter baumannii strain AB21-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=650775 L2Z46_RS11790 WP_000149374.1 2435680..2436498(-) (pilX) [Acinetobacter baumannii strain AB21-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993