Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   L2Z46_RS11780 Genome accession   NZ_CP091373
Coordinates   2431319..2431801 (-) Length   160 a.a.
NCBI ID   WP_001046416.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB21-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2426319..2436801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z46_RS11745 (L2Z46_11745) - 2426426..2427460 (+) 1035 WP_024432274.1 lipase secretion chaperone -
  L2Z46_RS11750 (L2Z46_11750) - 2427575..2428516 (+) 942 WP_086223958.1 triacylglycerol lipase -
  L2Z46_RS11755 (L2Z46_11755) rplS 2428569..2428937 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  L2Z46_RS11760 (L2Z46_11760) trmD 2429145..2429885 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  L2Z46_RS11765 (L2Z46_11765) rimM 2429931..2430479 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  L2Z46_RS11770 (L2Z46_11770) rpsP 2430499..2430750 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  L2Z46_RS11775 (L2Z46_11775) pilE 2430897..2431322 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  L2Z46_RS11780 (L2Z46_11780) pilY2 2431319..2431801 (-) 483 WP_001046416.1 type IV pilin protein Machinery gene
  L2Z46_RS11785 (L2Z46_11785) pilY1 2431814..2435668 (-) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z46_RS11790 (L2Z46_11790) pilX 2435680..2436498 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17533.80 Da        Isoelectric Point: 8.4817

>NTDB_id=650773 L2Z46_RS11780 WP_001046416.1 2431319..2431801(-) (pilY2) [Acinetobacter baumannii strain AB21-VUB]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=650773 L2Z46_RS11780 WP_001046416.1 2431319..2431801(-) (pilY2) [Acinetobacter baumannii strain AB21-VUB]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

95

100

0.95
  comE Acinetobacter baylyi ADP1

41.279

100

0.444