Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHT74_RS22770 Genome accession   NZ_CP107983
Coordinates   4969707..4970684 (+) Length   325 a.a.
NCBI ID   WP_266666205.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00354     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4964707..4975684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT74_RS22755 (OHT74_22785) - 4966098..4966748 (+) 651 WP_266672954.1 TetR/AcrR family transcriptional regulator -
  OHT74_RS22760 (OHT74_22790) - 4966869..4968407 (+) 1539 WP_328621221.1 MFS transporter -
  OHT74_RS22765 (OHT74_22795) - 4968556..4969323 (+) 768 WP_328623370.1 class III extradiol ring-cleavage dioxygenase -
  OHT74_RS22770 (OHT74_22800) rpoS 4969707..4970684 (+) 978 WP_266666205.1 sigma-70 family RNA polymerase sigma factor Regulator
  OHT74_RS22775 (OHT74_22805) - 4970794..4971738 (-) 945 WP_328621222.1 YafY family protein -
  OHT74_RS22780 (OHT74_22810) - 4971802..4973376 (+) 1575 WP_328621223.1 MFS transporter -
  OHT74_RS22785 (OHT74_22815) pfkB 4973494..4974444 (+) 951 WP_266666208.1 1-phosphofructokinase -
  OHT74_RS22790 (OHT74_22820) - 4974463..4975245 (-) 783 WP_266995092.1 DUF6227 family protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36620.31 Da        Isoelectric Point: 4.9068

>NTDB_id=650772 OHT74_RS22770 WP_266666205.1 4969707..4970684(+) (rpoS) [Streptomyces sp. NBC_00354]
MATRAVARRQSRGSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGETEREGETPAREELE
ALAAEGERAKEIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRIQREFNRENGREPDHAEIAAELDSTEKRVGDVLDWARDPVSLNMSVDDEGETQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=650772 OHT74_RS22770 WP_266666205.1 4969707..4970684(+) (rpoS) [Streptomyces sp. NBC_00354]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCAGGGGCAGCGCCCGCGCTGTGGGCGGGGAGATCGCCGACCGCGACCT
GGTGGGCATGTACCTGGACGAGATCGCGCGTACCCCGCTGCTCGACGCGGCCAAGGAAGTGGAGCTCTCGCAGATCATCG
AGGCGGGCGTGTACGCCCAGCAGATCCTCGACGGCGAGACGGAGCGCGAGGGCGAGACGCCGGCGCGCGAGGAGCTGGAA
GCGCTGGCCGCCGAGGGAGAGCGCGCCAAGGAGATCTTCATCCGCTCCAACCTCCGCCTCGTCGTGGCCGTCGCCCGCCG
CTACCCGCGAAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGGTGCGCGCCGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTGGTGGAGGAGCTCGGCCGGATCCGCCGGATCCAGCGGGAGTTCAACCGGGA
GAACGGCCGGGAACCGGACCACGCGGAGATCGCCGCCGAGCTGGACTCGACGGAGAAGCGCGTGGGCGACGTCCTGGACT
GGGCGCGCGACCCGGTCAGCCTGAACATGTCCGTGGACGACGAGGGCGAGACGCAGTTCGGTGACCTCCTCGAGGACACC
TCCGCGATCTCCCCGGAGCAGTCCGTCCTGTCGCTCCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTGGACCA
GCGCACGGCGTCGATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGGACCCTGACGGAGGTCGGCAAGCAGC
ACGGCCTGACGCGGGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTCGAGCTGAAGCGCATGGCCCGCGACACGGGC
TTCGACGCCGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70, region 4 (Sigma70_r4)

(261-313)

Sigma-70 region 3 (Sigma70_r3)

(172-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.333

92.308

0.363