Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   L2Z46_RS11805 Genome accession   NZ_CP091373
Coordinates   2438051..2438524 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain AB21-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2433051..2443524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z46_RS11790 (L2Z46_11790) pilX 2435680..2436498 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z46_RS11795 (L2Z46_11795) pilW 2436495..2437496 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  L2Z46_RS11800 (L2Z46_11800) pilV 2437497..2438057 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L2Z46_RS11805 (L2Z46_11805) fimU 2438051..2438524 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  L2Z46_RS11810 (L2Z46_11810) ispH 2438694..2439644 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z46_RS11815 (L2Z46_11815) gmk 2439767..2440396 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z46_RS11820 (L2Z46_11820) rpoZ 2440469..2440747 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z46_RS11825 (L2Z46_11825) - 2440786..2440915 (+) 130 Protein_2311 hypothetical protein -
  L2Z46_RS11830 (L2Z46_11830) - 2440955..2443060 (+) 2106 WP_001117589.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=650778 L2Z46_RS11805 WP_001214065.1 2438051..2438524(-) (fimU) [Acinetobacter baumannii strain AB21-VUB]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=650778 L2Z46_RS11805 WP_001214065.1 2438051..2438524(-) (fimU) [Acinetobacter baumannii strain AB21-VUB]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1