Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   OG959_RS32685 Genome accession   NZ_CP107951
Coordinates   7320822..7321895 (+) Length   357 a.a.
NCBI ID   WP_326664282.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00385     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7315822..7326895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG959_RS32655 (OG959_32680) - 7316314..7316859 (+) 546 WP_326664280.1 hypothetical protein -
  OG959_RS32660 (OG959_32685) pdxS 7317075..7317995 (+) 921 WP_148016286.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  OG959_RS32665 (OG959_32690) pdxT 7318002..7318595 (+) 594 WP_326664281.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  OG959_RS32670 (OG959_32695) - 7318657..7319409 (+) 753 WP_123468415.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OG959_RS32675 (OG959_32700) ruvC 7319543..7320118 (+) 576 WP_219570309.1 crossover junction endodeoxyribonuclease RuvC -
  OG959_RS32680 (OG959_32705) ruvA 7320115..7320741 (+) 627 WP_219570308.1 Holliday junction branch migration protein RuvA -
  OG959_RS32685 (OG959_32710) ruvB 7320822..7321895 (+) 1074 WP_326664282.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OG959_RS32690 (OG959_32715) yajC 7322060..7322536 (+) 477 WP_306069493.1 preprotein translocase subunit YajC -
  OG959_RS32695 (OG959_32720) secD 7322683..7324422 (+) 1740 WP_326664285.1 protein translocase subunit SecD -
  OG959_RS32700 (OG959_32725) secF 7324424..7325524 (+) 1101 WP_326664287.1 protein translocase subunit SecF -
  OG959_RS32705 (OG959_32730) - 7325521..7326072 (+) 552 WP_326664289.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38197.65 Da        Isoelectric Point: 4.8394

>NTDB_id=650119 OG959_RS32685 WP_326664282.1 7320822..7321895(+) (ruvB) [Streptomyces sp. NBC_00385]
MNWDETGPDTDELLDERLVDAGADGEDTAVEAALRPKDLDEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPGLGKT
TLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIP
LELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPTELERVIHRSAGLLDVAIDVEGAAEIAGRSRGTPRIANRLLRR
VRDYAQVKADGRIDREIAAAALRVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREG
LLARTPRGRVATPAAWAHLGLVPPQHGGKGQQGLFGA

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=650119 OG959_RS32685 WP_326664282.1 7320822..7321895(+) (ruvB) [Streptomyces sp. NBC_00385]
ATGAACTGGGACGAGACCGGACCCGACACCGACGAGCTCCTCGACGAGCGGCTCGTCGACGCGGGAGCGGACGGCGAGGA
CACCGCGGTCGAGGCGGCGCTGCGCCCCAAGGACCTCGACGAGTTCGTCGGCCAGGAGAAGGTGCGCGAACAGCTCGACC
TGGTCCTCAAGGCGGCCCGTGCCCGTGGCGCCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGCCTGGGCAAGACC
ACCCTCTCCATGATCATCGCGGCGGAGATGAACGCGCCGATCCGGATCACCTCCGGCCCCGCCATCCAGCACGCGGGGGA
CCTGGCCGCGATCCTGTCCTCGCTCCAGGAGGGCGAGGTGCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCG
AGGAGATGCTCTACATGGCCATGGAGGACTTCCGGGTCGACGTGATCGTCGGCAAGGGGCCCGGAGCCACCGCCATCCCG
CTGGAGCTGCCGCCCTTCACCCTGGTCGGCGCGACCACCCGGGCCGGACTGCTGCCGCCCCCGCTGCGCGACCGCTTCGG
CTTCACCGGGCACATGGAGTTCTACGCCCCCACCGAACTGGAACGGGTGATTCACCGCTCGGCGGGCCTCCTGGACGTCG
CGATAGACGTCGAGGGCGCCGCCGAGATCGCCGGGCGCTCCCGCGGCACGCCCCGCATCGCCAACCGGCTGCTGCGCCGC
GTCCGGGACTACGCCCAGGTCAAGGCCGACGGCCGGATCGACCGCGAGATCGCCGCCGCGGCCCTCAGGGTGTACGAGGT
CGATGCCAGGGGCCTGGACCGGCTGGACCGGGCGGTGCTCGGCGCCCTGCTGAAACTCTTCGGCGGCGGCCCGGTGGGCC
TGTCCACCCTCGCGGTGGCCGTGGGTGAGGAGCGCGAAACGGTCGAGGAGGTCGCGGAGCCCTTCCTCGTACGGGAAGGA
CTGCTGGCCAGGACGCCTCGGGGGCGCGTCGCCACCCCGGCCGCCTGGGCTCATCTCGGGCTGGTGCCTCCACAGCACGG
CGGAAAGGGACAACAGGGCCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(34-192)

RuvB AAA lid domain (AAA_lid_4)

(195-268)

RuvB C-terminal winged helix domain (WHD_RuvB)

(270-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.453

93.277

0.499
  ruvB Streptococcus pneumoniae TIGR4

52.469

90.756

0.476
  ruvB Streptococcus pneumoniae R6

52.469

90.756

0.476
  ruvB Streptococcus pneumoniae D39

52.469

90.756

0.476
  ruvB Synechocystis sp. PCC 6803

53.822

87.955

0.473
  ruvB Helicobacter pylori 26695

50.625

89.636

0.454