Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OG917_RS25245 Genome accession   NZ_CP107948
Coordinates   5617972..5619594 (+) Length   540 a.a.
NCBI ID   WP_328319886.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00388     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5612972..5624594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG917_RS25210 (OG917_25215) lepB 5613124..5613888 (+) 765 WP_328319881.1 signal peptidase I -
  OG917_RS25215 (OG917_25220) lepB 5613881..5614960 (+) 1080 WP_328319882.1 signal peptidase I -
  OG917_RS25220 (OG917_25225) lepB 5614875..5615846 (+) 972 WP_328322170.1 signal peptidase I -
  OG917_RS25225 (OG917_25230) lepB 5615892..5616641 (+) 750 WP_328319883.1 signal peptidase I -
  OG917_RS25230 (OG917_25235) - 5616631..5617119 (+) 489 WP_328319884.1 NUDIX hydrolase -
  OG917_RS25235 (OG917_25240) - 5617175..5617483 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  OG917_RS25240 (OG917_25245) - 5617613..5617972 (+) 360 WP_328319885.1 YraN family protein -
  OG917_RS25245 (OG917_25250) comM 5617972..5619594 (+) 1623 WP_328319886.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OG917_RS25250 (OG917_25255) dprA 5619591..5620760 (+) 1170 WP_328319887.1 DNA-processing protein DprA -
  OG917_RS25255 (OG917_25260) whiG 5620969..5621805 (+) 837 WP_328319888.1 RNA polymerase sigma factor WhiG -
  OG917_RS25260 (OG917_25265) - 5621897..5622436 (+) 540 WP_328322172.1 helix-turn-helix domain-containing protein -
  OG917_RS25265 (OG917_25270) - 5622637..5623242 (-) 606 Protein_4973 peptidoglycan DD-metalloendopeptidase family protein -
  OG917_RS25270 (OG917_25275) rpsB 5623597..5624529 (+) 933 WP_328319889.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 55584.90 Da        Isoelectric Point: 7.9593

>NTDB_id=649954 OG917_RS25245 WP_328319886.1 5617972..5619594(+) (comM) [Streptomyces sp. NBC_00388]
MGFARACSVALVGVDGVVVEVQADLEPGIAAFTLVGLPDKSLIESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKSGSG
FDLAVACAVLGAAERIDPKEIADLVLIGELGLDGRVRPVRGILPAVLAAAEAGYRQVVVPEQTAGEASLVPGVSVLGVRS
LRQLIAVLSGEPVPEEAAPVEGRPDSMLAGLMVPGTGAGTGLAPGAGRGSGADLADVAGQPAARKALEVAATGAHHLLLH
GPPGAGKTMLAERLPAILPPLTRQESLEVTAVHSVAGILPPGEPLIRTAPYCAPHHSATMQSLVGGGNGLPRPGAVTLAH
RGVLFLDETPEFSVRALDALRQPLESGQVVIARSAGVVRLPARFLMVLAANPCPCGRHTLNGSGCDCPPSVVRRYQARLS
GPLLDRVDLRVQVEPVRRSDLMGHGEAGESSAVVAARVREGRERAAARLAGTPWNANSEVPGHELRTRWTAAPGALAAAE
RDMERGLLTARGLDRVLRVAWTVADLAGRDRPGSRDVALALQLRTGVDRGALQAAGKDAG

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=649954 OG917_RS25245 WP_328319886.1 5617972..5619594(+) (comM) [Streptomyces sp. NBC_00388]
ATGGGCTTCGCGCGGGCGTGTTCGGTCGCGCTGGTCGGCGTCGACGGCGTGGTGGTGGAGGTCCAGGCGGATCTCGAACC
GGGCATCGCCGCCTTCACGCTGGTGGGGCTGCCGGACAAGAGCCTGATCGAGAGCCGGGACCGGGTCAGGGCGGCCGTGG
TGAACTCCGGCGCCGAGTGGCCACAGAAGAAGCTCACCGTCGGGCTGAGCCCCGCGTCGGTCCCGAAGAGCGGCAGCGGC
TTCGATCTGGCCGTCGCCTGCGCCGTCCTGGGTGCCGCCGAGCGCATCGACCCCAAGGAGATCGCCGATCTGGTGCTCAT
CGGGGAGCTGGGACTCGACGGCCGGGTCAGGCCGGTGCGCGGCATCCTGCCCGCCGTGCTGGCGGCGGCGGAGGCGGGGT
ACCGCCAGGTCGTGGTCCCCGAGCAGACAGCGGGGGAGGCCTCGCTCGTGCCGGGTGTCTCGGTGCTCGGGGTGCGGAGT
CTGCGGCAGCTCATCGCCGTGCTGAGCGGTGAGCCGGTGCCCGAAGAGGCGGCTCCGGTGGAGGGGCGTCCGGATTCGAT
GCTGGCCGGGCTGATGGTGCCGGGCACCGGGGCCGGTACCGGGCTGGCCCCGGGGGCGGGGCGGGGATCAGGTGCTGATC
TCGCGGACGTGGCAGGACAGCCGGCGGCCAGAAAGGCGCTGGAGGTCGCCGCCACCGGCGCCCATCACCTGCTGCTGCAC
GGGCCCCCGGGCGCGGGCAAGACCATGCTGGCCGAACGGCTTCCGGCAATCCTGCCTCCCCTGACCAGGCAGGAATCCCT
GGAGGTGACCGCGGTCCACTCGGTGGCCGGCATCCTCCCGCCGGGAGAGCCCCTGATCCGGACCGCGCCGTACTGCGCGC
CGCACCATTCGGCGACCATGCAGTCGCTGGTCGGCGGCGGCAACGGACTGCCGCGGCCGGGAGCCGTGACCCTGGCCCAT
CGGGGTGTCCTCTTTCTGGATGAAACGCCTGAATTCTCTGTTCGGGCGCTCGACGCGCTCCGGCAGCCCCTGGAGTCCGG
CCAGGTGGTGATCGCACGCAGCGCCGGAGTGGTGCGCCTGCCCGCCCGGTTCCTGATGGTGCTGGCCGCCAACCCCTGCC
CCTGCGGCCGGCACACCCTGAACGGCTCGGGGTGCGACTGCCCGCCGTCGGTGGTCCGGCGCTACCAGGCCAGGCTCTCC
GGCCCCCTCCTCGACCGGGTGGACCTCCGGGTCCAGGTGGAGCCGGTCCGCCGCTCGGACCTCATGGGGCACGGGGAGGC
GGGCGAGTCGTCGGCGGTGGTGGCCGCGCGCGTACGGGAAGGCCGGGAGCGGGCCGCCGCGCGGCTGGCCGGCACGCCGT
GGAACGCCAACAGCGAGGTGCCGGGCCACGAGCTGCGGACGAGGTGGACGGCCGCGCCAGGAGCGCTCGCCGCGGCCGAG
CGCGACATGGAACGAGGACTGCTGACGGCGCGCGGCCTCGACCGGGTGCTGAGAGTGGCCTGGACGGTCGCCGACCTGGC
CGGCCGTGACCGGCCGGGCTCCCGGGACGTGGCGCTCGCTCTCCAGCTGCGTACCGGGGTGGACCGTGGGGCGCTGCAGG
CCGCAGGGAAGGACGCCGGATGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(428-524)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(213-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

38.59

99.815

0.385
  comM Vibrio cholerae strain A1552

38.59

99.815

0.385
  comM Vibrio campbellii strain DS40M4

38.941

97.963

0.381
  comM Haemophilus influenzae Rd KW20

38.447

97.778

0.376
  comM Acinetobacter baylyi ADP1

39.25

93.889

0.369
  comM Glaesserella parasuis strain SC1401

36.822

99.074

0.365