Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG389_RS33995 Genome accession   NZ_CP107924
Coordinates   7542327..7543010 (-) Length   227 a.a.
NCBI ID   WP_328302811.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00435     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7537327..7548010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG389_RS33980 (OG389_33975) - 7539263..7539685 (+) 423 WP_328302805.1 DUF350 domain-containing protein -
  OG389_RS33985 (OG389_33980) - 7539822..7541102 (-) 1281 WP_328302807.1 acyltransferase -
  OG389_RS33990 (OG389_33985) - 7541099..7542151 (-) 1053 WP_328302809.1 alpha/beta hydrolase -
  OG389_RS33995 (OG389_33990) vraR 7542327..7543010 (-) 684 WP_328302811.1 response regulator transcription factor Regulator
  OG389_RS34000 (OG389_33995) - 7543007..7544245 (-) 1239 WP_328304304.1 histidine kinase -
  OG389_RS34005 (OG389_34000) - 7544697..7545644 (+) 948 WP_328302813.1 AEC family transporter -
  OG389_RS34010 (OG389_34005) - 7545634..7546059 (+) 426 WP_328302815.1 HXXEE domain-containing protein -
  OG389_RS34015 (OG389_34010) - 7546066..7546458 (+) 393 WP_328302817.1 hypothetical protein -
  OG389_RS34020 (OG389_34015) - 7546412..7547332 (-) 921 WP_328302819.1 trypsin-like peptidase domain-containing protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24502.37 Da        Isoelectric Point: 6.1228

>NTDB_id=649506 OG389_RS33995 WP_328302811.1 7542327..7543010(-) (vraR) [Streptomyces sp. NBC_00435]
MTIRVIIVDDQAMVRAGFAALLSAQADIDVVGEAPDGRQGVQVSRTVHPDVVLMDVRMPEMDGLSAARELLDPPPGVVHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVERRPAPRKNPALRLNGL
TPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLGKLDLRDRAQAVIFAYEAGLVRPGDSRA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=649506 OG389_RS33995 WP_328302811.1 7542327..7543010(-) (vraR) [Streptomyces sp. NBC_00435]
TTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTACGGGCCGGATTCGCCGCGCTGTTGTCGGCACAGGCCGA
CATCGACGTGGTGGGCGAGGCGCCCGACGGGCGCCAGGGCGTCCAGGTGTCCCGCACCGTCCACCCCGACGTGGTGCTGA
TGGACGTCCGGATGCCGGAGATGGACGGGCTCAGCGCCGCCCGCGAGCTCCTCGATCCCCCGCCGGGGGTGGTGCACCGG
CCGAAGGTGCTGATGCTGACCACCTTCGACATCGACGACTACGTGTACGAGGCGCTGCGCGCCGGCGCCTCCGGGTTCCT
GCTGAAGGACGCCCCGCCGGCGGATCTGATCGCGGCGGTCCGGGTCGTCGCCTCGGGCGAGGCGCTGCTGGCGCCGTCCG
TCACCCGGCGGCTGATCGCGGACTTCGTCGAGCGGCGGCCCGCGCCGCGCAAGAATCCGGCGCTGCGGCTGAACGGGCTG
ACCCCGCGGGAGACCGAGGTACTGGAACTCATCGCACGCGGGCTGTCCAACCAGGAGATCGCCGGACACCTGGTGCTCGC
CGAGCAGACGGTCAAGACCCACATCGGTCGGGTGCTGGGCAAACTGGACCTGCGCGACCGGGCCCAGGCGGTGATCTTCG
CGTACGAGGCGGGGCTGGTGCGGCCGGGCGACTCCAGGGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.629

97.357

0.405
  degU Bacillus subtilis subsp. subtilis str. 168

37.445

100

0.374