Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   L2Z39_RS11060 Genome accession   NZ_CP091338
Coordinates   2306050..2309895 (-) Length   1281 a.a.
NCBI ID   WP_025469982.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB231-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2301050..2314895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z39_RS11025 (L2Z39_11025) - 2301420..2302639 (+) 1220 WP_087486619.1 IS3-like element ISAba19 family transposase -
  L2Z39_RS11030 (L2Z39_11030) rplS 2302805..2303173 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  L2Z39_RS11035 (L2Z39_11035) trmD 2303381..2304121 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  L2Z39_RS11040 (L2Z39_11040) rimM 2304167..2304715 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  L2Z39_RS11045 (L2Z39_11045) rpsP 2304735..2304986 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  L2Z39_RS11050 (L2Z39_11050) pilE 2305133..2305558 (-) 426 WP_005127886.1 type IV pilin protein Machinery gene
  L2Z39_RS11055 (L2Z39_11055) pilY2 2305555..2306037 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  L2Z39_RS11060 (L2Z39_11060) pilY1 2306050..2309895 (-) 3846 WP_025469982.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z39_RS11065 (L2Z39_11065) pilX 2309907..2310725 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z39_RS11070 (L2Z39_11070) pilW 2310722..2311723 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  L2Z39_RS11075 (L2Z39_11075) pilV 2311724..2312284 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L2Z39_RS11080 (L2Z39_11080) fimU 2312278..2312751 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  L2Z39_RS11085 (L2Z39_11085) ispH 2312921..2313871 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z39_RS11090 (L2Z39_11090) gmk 2313994..2314623 (+) 630 WP_000015937.1 guanylate kinase -

Sequence

Protein


Download         Length: 1281 a.a.        Molecular weight: 137559.17 Da        Isoelectric Point: 7.8780

>NTDB_id=649457 L2Z39_RS11060 WP_025469982.1 2306050..2309895(-) (pilY1) [Acinetobacter baumannii strain AB231-VUB]
MKLKLKNFKPNNLWYAVCSSSMIFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLAMLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQILVAAAPLGDASTLNTVGSQRYKLKQAVANLKSGGTTPSAHAYAEAAAYLM
GTTTYSETNYAIRKESYIKRVRRFDNKTEYSSCTNSSQIDINTLSQSCRSNGWSSWTTFNPGVNTLTDYETSSDWTYYYT
YYYTTFNYAVANADSGIPKSKSNDTASNPNIVVDRNATNSNAVYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTRSAS
VMSTALGSTFGADFNCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLSSRT
QSDRKGDDACSPNQSTNAVAAPGYGNGGFFPTQSSQGVTDSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEYGYL
RAFEPNPANTYLTWRGNLKKYHVVLSGANAGAFEANSGGLVYNASGAFRTGTKDYWNSSTYTDGGKVFLGGSYANVPLPI
AGQPETRDAEGNITKYYYAVQSKIRNLFTDVSAVAADGSLTKISTSGTNLLKIPAVPPEGTNPFDTVANTASYVLGKFDP
STGQNILKAFPISLKLKILNYLGYSTDINATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDDNGNLTSAREQSILY
GTMEGGLHIVDASSGIEQMVFVPADILNDSVASKALVVGQSDASAPAHGMDGAWVSDPAYNITTVGSGSSAVSKVTAKQM
NIYGGMRMGGSSYYGLDVLSPTSPKLLFRIGADQTDYSRMGQSWSKPVLANIRYNGSIRRVLIVGGGYDQCYEKPNITLT
DACFTNGKAKGNAVYIIDAKTGQRLWWTSDTGSNTDNANMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRVDLNNNQ
TKTNSTYSSFGVRVVRLANLATNDSTYDGTNDYTGGNAPRFYEPPTVTIHDYGIHTFITVGIASGDRSTPLDVYPLTGRE
GMTPASALSGRPVNNVYGIIDRDFVKKNLMSLTDNQLETKDITRTGLRKNPQILRTGETRVAQIFFPTTGVGKGGWYRSL
SSTSDGTEKANNSFRIKGGLKAFEEPMAITGNLIIPVYDPQGTGIVAADPCLPRVVGETDRQTYCLPFGACLNPDGTINS
NKENPSGFQTKTGSNCPAGVSECNTNVIGAGIRNITFVPKRDEPPVTNSCGKLQLSGNENGTGEWQCTSHLLPVRWYERY
R

Nucleotide


Download         Length: 3846 bp        

>NTDB_id=649457 L2Z39_RS11060 WP_025469982.1 2306050..2309895(-) (pilY1) [Acinetobacter baumannii strain AB231-VUB]
ATGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCGTCTGTTCAAGCTCAATGATATTCACATGGCT
GATGACAAGCTCTGTGGTGCAGGCAAGTGATTTACAAATTTATGCCTCACCTACAGCAGGTAAAAAAACAATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAACAATAGTTATGGTGAAAACCGCTTAGCCATGCTTAAAAATGGTATGAATGCT
TTTTTGGCTAGCAATAACCCTGTCTTAAATGATACGCGAGTAGGTTTAGGAAATTTCTCGGCAAATGGTGACAGCCGAAG
TGGACAAATTTTAGTGGCTGCTGCTCCTTTAGGTGATGCAAGTACTTTAAATACGGTAGGCTCACAACGTTATAAATTAA
AACAAGCTGTTGCTAATTTAAAATCAGGGGGCACGACACCTTCAGCCCATGCTTATGCTGAAGCAGCTGCTTACTTAATG
GGAACAACCACATATTCAGAAACGAATTATGCTATTCGTAAAGAGAGTTATATTAAACGTGTAAGAAGATTTGATAATAA
AACTGAATACTCTTCTTGCACTAATTCTTCACAAATTGATATTAATACCTTAAGTCAATCATGTCGTTCTAATGGCTGGA
GTAGCTGGACCACGTTCAATCCAGGAGTAAATACATTAACAGATTATGAGACTTCATCTGACTGGACTTATTACTATACT
TATTACTACACCACTTTTAATTATGCTGTAGCAAATGCAGATAGCGGTATTCCAAAATCTAAATCAAACGATACAGCTAG
CAATCCGAATATTGTTGTAGACCGAAATGCTACTAACTCCAATGCAGTGTATCAGTCACCTTTACCTGCAGTAGCGAATC
GTCAGAGTTGTGATGGACAAGGTATTTACTTCTTATCGGATGGCGAACCGAACAATACAACAAATACACGTTCGGCAAGT
GTTATGTCGACTGCTTTAGGTAGTACTTTTGGAGCTGATTTTAATTGTTCTGGAGGTTTATCTAACACTACGGCAGACTC
TGGTTGGGCTTGTATGGGGGAGTTTGCAAAAAGATTATTTGATAAAACAAAGAATCCTGCCGGAGTCTCTATTCAAACAG
CATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTGAGTTCTTCTGATGTAAAAAATGCCTGCCGTTTAAGTTCGAGAACC
CAGTCTGACCGAAAAGGAGATGATGCGTGTTCACCGAATCAATCTACAAATGCGGTAGCTGCACCAGGTTATGGAAATGG
TGGTTTTTTCCCTACTCAGAGTTCACAAGGTGTAACAGACAGCGTTATCGCATTTATTAATAATTTAGATAAAGTTCCTT
TAGAACCCTTAACCACAGGTGCTATCTCAGTTCCATATGATGCATTGAATCCCAAAAATTTACAGGAATATGGTTATTTA
CGAGCTTTTGAGCCAAATCCAGCTAACACGTACTTAACATGGCGTGGAAATTTAAAGAAATATCATGTTGTTTTATCTGG
AGCGAATGCAGGTGCTTTTGAGGCCAATTCTGGCGGATTAGTCTACAATGCAAGTGGGGCTTTTAGGACTGGAACAAAGG
ATTATTGGAATAGCTCTACTTATACTGACGGAGGCAAAGTCTTTTTAGGTGGTTCATATGCGAATGTGCCTTTACCCATT
GCTGGGCAACCTGAAACACGTGATGCAGAAGGAAATATCACAAAATATTATTACGCAGTACAAAGTAAAATCCGCAACTT
ATTTACTGATGTTTCCGCCGTTGCAGCAGATGGTAGCTTAACGAAAATTTCAACTTCTGGAACTAATTTGCTAAAAATTC
CAGCTGTTCCACCAGAAGGAACTAATCCTTTTGATACGGTGGCTAATACAGCAAGTTATGTTTTAGGTAAATTTGATCCA
TCAACTGGACAAAATATTTTAAAAGCTTTTCCTATAAGCTTGAAATTAAAAATATTAAATTATTTAGGTTATTCAACAGA
TATTAATGCAACAACTCTGCCTTCATCTTTGGTTACATCGAATGAACCTTATTTATCGATGGGGGGAAGTATTCACTCTT
TACCGGTTCAACTAACCTACAATGGAACACTAGATGATAATGGGAATTTAACATCTGCCCGAGAACAATCCATCCTCTAT
GGAACCATGGAAGGCGGGTTACATATTGTGGATGCTTCATCTGGTATTGAGCAAATGGTCTTTGTTCCTGCAGATATTTT
AAATGATTCAGTTGCTTCCAAAGCTTTAGTTGTTGGTCAAAGTGATGCTTCAGCTCCCGCTCATGGTATGGACGGAGCTT
GGGTATCTGATCCAGCCTATAATATTACTACAGTGGGAAGTGGTAGCTCGGCAGTATCAAAAGTAACTGCAAAGCAAATG
AATATTTATGGCGGCATGCGCATGGGGGGAAGTAGCTACTACGGACTAGATGTATTAAGCCCTACTTCACCGAAACTGCT
TTTTAGAATAGGGGCAGACCAGACTGACTATAGCCGTATGGGTCAAAGCTGGTCTAAACCCGTACTCGCGAACATCCGTT
ATAACGGTTCTATTAGACGCGTCCTGATTGTTGGCGGTGGTTATGATCAGTGTTATGAAAAACCAAATATTACGTTGACT
GACGCTTGCTTTACCAATGGAAAAGCAAAAGGAAATGCTGTCTATATTATTGACGCAAAAACTGGTCAGCGTTTGTGGTG
GACAAGTGATACAGGTTCTAATACTGATAACGCCAATATGAAGCATAGTATTGTTAGCCGTATTAGTACTTTAGACCGTG
ATGCTGATGGCTTAGTCGACCATCTATATTTTGGAGATTTAGGCGGACAAATTTTTCGCGTGGACCTTAATAATAATCAG
ACAAAAACCAATTCGACCTATAGCAGTTTTGGTGTCAGAGTTGTGCGTTTAGCGAATTTAGCAACAAATGATTCAACTTA
TGATGGCACAAATGATTATACAGGTGGGAATGCTCCTCGTTTTTATGAGCCTCCAACAGTAACGATCCACGATTATGGAA
TTCACACTTTTATTACAGTAGGTATTGCATCAGGAGACCGTAGTACACCTTTAGACGTTTACCCACTCACAGGCCGTGAA
GGTATGACGCCTGCAAGTGCATTAAGTGGACGTCCTGTAAATAATGTATATGGAATTATTGATAGAGACTTTGTTAAAAA
GAACTTAATGTCTTTAACTGATAATCAGCTTGAAACAAAAGATATTACACGGACAGGCTTAAGAAAAAATCCACAAATTC
TAAGAACAGGTGAAACAAGAGTAGCTCAAATTTTCTTCCCCACTACAGGAGTAGGTAAAGGTGGTTGGTATCGCTCGCTT
TCTAGTACGAGCGATGGTACAGAAAAAGCTAATAATAGTTTTCGTATTAAAGGAGGACTCAAAGCTTTTGAGGAACCAAT
GGCAATTACGGGTAATTTAATTATTCCAGTTTATGACCCTCAAGGAACGGGAATTGTTGCGGCAGATCCTTGCCTACCTC
GTGTTGTGGGAGAAACAGACCGACAAACTTATTGTTTACCATTTGGTGCTTGTCTTAATCCGGATGGAACCATTAATTCA
AATAAAGAAAACCCGAGCGGGTTTCAAACAAAAACTGGTAGTAACTGTCCAGCTGGAGTCTCTGAATGTAATACAAATGT
CATTGGTGCAGGTATTCGTAATATCACATTTGTTCCAAAAAGAGATGAACCTCCTGTGACTAATAGTTGTGGCAAATTAC
AGCTGTCTGGAAACGAGAACGGAACAGGTGAGTGGCAGTGTACAAGTCATTTACTTCCTGTGCGCTGGTATGAGCGCTAT
CGCTAG

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(712-961)

von Willebrand factor type A domain (VWA_2)

(51-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

88.733

100

0.891