Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   L2Z39_RS11055 Genome accession   NZ_CP091338
Coordinates   2305555..2306037 (-) Length   160 a.a.
NCBI ID   WP_001046423.1    Uniprot ID   A0A9E9MD39
Organism   Acinetobacter baumannii strain AB231-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2300555..2311037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z39_RS11025 (L2Z39_11025) - 2301420..2302639 (+) 1220 WP_087486619.1 IS3-like element ISAba19 family transposase -
  L2Z39_RS11030 (L2Z39_11030) rplS 2302805..2303173 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  L2Z39_RS11035 (L2Z39_11035) trmD 2303381..2304121 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  L2Z39_RS11040 (L2Z39_11040) rimM 2304167..2304715 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  L2Z39_RS11045 (L2Z39_11045) rpsP 2304735..2304986 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  L2Z39_RS11050 (L2Z39_11050) pilE 2305133..2305558 (-) 426 WP_005127886.1 type IV pilin protein Machinery gene
  L2Z39_RS11055 (L2Z39_11055) pilY2 2305555..2306037 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  L2Z39_RS11060 (L2Z39_11060) pilY1 2306050..2309895 (-) 3846 WP_025469982.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z39_RS11065 (L2Z39_11065) pilX 2309907..2310725 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17575.84 Da        Isoelectric Point: 8.4834

>NTDB_id=649456 L2Z39_RS11055 WP_001046423.1 2305555..2306037(-) (pilY2) [Acinetobacter baumannii strain AB231-VUB]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAVKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=649456 L2Z39_RS11055 WP_001046423.1 2305555..2306037(-) (pilY2) [Acinetobacter baumannii strain AB231-VUB]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGTTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGAACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419