Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2Z39_RS11065 Genome accession   NZ_CP091338
Coordinates   2309907..2310725 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain AB231-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2304907..2315725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z39_RS11050 (L2Z39_11050) pilE 2305133..2305558 (-) 426 WP_005127886.1 type IV pilin protein Machinery gene
  L2Z39_RS11055 (L2Z39_11055) pilY2 2305555..2306037 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  L2Z39_RS11060 (L2Z39_11060) pilY1 2306050..2309895 (-) 3846 WP_025469982.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z39_RS11065 (L2Z39_11065) pilX 2309907..2310725 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z39_RS11070 (L2Z39_11070) pilW 2310722..2311723 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  L2Z39_RS11075 (L2Z39_11075) pilV 2311724..2312284 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L2Z39_RS11080 (L2Z39_11080) fimU 2312278..2312751 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  L2Z39_RS11085 (L2Z39_11085) ispH 2312921..2313871 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z39_RS11090 (L2Z39_11090) gmk 2313994..2314623 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z39_RS11095 (L2Z39_11095) rpoZ 2314696..2314974 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z39_RS11100 (L2Z39_11100) - 2315013..2315143 (+) 131 Protein_2172 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=649458 L2Z39_RS11065 WP_000149376.1 2309907..2310725(-) (pilX) [Acinetobacter baumannii strain AB231-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=649458 L2Z39_RS11065 WP_000149376.1 2309907..2310725(-) (pilX) [Acinetobacter baumannii strain AB231-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989