Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG389_RS16035 Genome accession   NZ_CP107924
Coordinates   3521793..3522770 (-) Length   325 a.a.
NCBI ID   WP_328299165.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00435     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3516793..3527770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG389_RS16015 (OG389_16025) pfkB 3517188..3518141 (-) 954 WP_328299162.1 1-phosphofructokinase -
  OG389_RS16020 (OG389_16030) - 3518138..3518908 (-) 771 WP_328299163.1 DeoR/GlpR family DNA-binding transcription regulator -
  OG389_RS16025 (OG389_16035) - 3519061..3520494 (-) 1434 WP_328303829.1 MFS transporter -
  OG389_RS16030 (OG389_16040) - 3520723..3521697 (+) 975 WP_328299164.1 transcriptional regulator -
  OG389_RS16035 (OG389_16045) rpoS 3521793..3522770 (-) 978 WP_328299165.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG389_RS16040 (OG389_16050) - 3522948..3523298 (+) 351 Protein_3167 GNAT family N-acetyltransferase -
  OG389_RS16045 (OG389_16055) - 3523324..3523740 (-) 417 WP_328299166.1 hypothetical protein -
  OG389_RS16050 (OG389_16060) - 3523757..3524557 (-) 801 WP_328299167.1 class III extradiol ring-cleavage dioxygenase -
  OG389_RS16055 (OG389_16065) - 3524687..3526222 (-) 1536 WP_328299168.1 MFS transporter -
  OG389_RS16060 (OG389_16070) - 3526307..3527104 (-) 798 WP_328299169.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36492.26 Da        Isoelectric Point: 5.2545

>NTDB_id=649459 OG389_RS16035 WP_328299165.1 3521793..3522770(-) (rpoS) [Streptomyces sp. NBC_00435]
MATRAVARRQSTSSARAASGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGAIERKGKKPSQEELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNRENGRDPEHAEIAAELDTTEKRVGDVLDWARDPVSLNMGVDEDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAAA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=649459 OG389_RS16035 WP_328299165.1 3521793..3522770(-) (rpoS) [Streptomyces sp. NBC_00435]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCTCGCGCTGCGAGCGGGGAGATCGCAGACCGCGACCT
GGTCGGGATGTACCTGGACGAGATCGCACGCACCCCGCTGCTCGACGCCGCCAAGGAAGTGGAGCTCTCGCAGATCATCG
AGGCGGGCGTCTACGCCCAGCAGATCCTCGACGGCGCGATAGAGCGCAAGGGCAAGAAGCCCTCCCAGGAGGAGCTCGAG
GCCCTGGCCGCCGAAGGTGAGCGTGCGAAGGAAGTCTTCATCCGCTCCAACCTCCGCCTGGTCGTCGCGGTCGCCCGCCG
CTACCCGCGCAGCGGTCTGCCGCTCCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGGTGCGCGCGGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCGGACCAG
TCCCGCACCATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTCGGCCGGATCCGCCGGGTCCAGCGCGAGTTCAACCGTGA
GAACGGCCGGGACCCGGAGCACGCGGAGATCGCCGCCGAGCTGGACACCACGGAGAAGCGGGTCGGCGACGTCCTGGACT
GGGCGCGCGACCCGGTCAGCCTGAACATGGGCGTGGACGAGGACGGCGACACCCAGTTCGGCGACCTCCTGGAGGACACC
TCCGCGATCTCCCCGGAGCAGTCCGTCCTGTCCCTCCTGCGCAGCGAGGAGTTGGAGGACCTGCTGGGCAAGCTGGACCA
GCGGACGGCGTCGATCATCAAGATGCGCTACGGCATCGAGGACGGCCGTGAGCGTACGCTGACAGAGGTGGGCAAGCAGC
ACGGCCTGACCCGCGAACGGATCCGGCAGATCGAGAAGCACGCGCTCCTCGAGCTGAAGCGGATGGCCCGCGACACAGGC
TTCGACGCGGCGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70, region 4 (Sigma70_r4)

(261-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.667

92.308

0.366