Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   L2Z44_RS18675 Genome accession   NZ_CP091333
Coordinates   3891414..3891896 (+) Length   160 a.a.
NCBI ID   WP_001046419.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3886414..3896896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS18665 (L2Z44_18665) pilX 3886717..3887535 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z44_RS18670 (L2Z44_18670) pilY1 3887547..3891401 (+) 3855 WP_075399889.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z44_RS18675 (L2Z44_18675) pilY2 3891414..3891896 (+) 483 WP_001046419.1 type IV pilin protein Machinery gene
  L2Z44_RS18680 (L2Z44_18680) pilE 3891893..3892318 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene
  L2Z44_RS18685 (L2Z44_18685) rpsP 3892465..3892716 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  L2Z44_RS18690 (L2Z44_18690) rimM 3892736..3893284 (+) 549 WP_075399890.1 ribosome maturation factor RimM -
  L2Z44_RS18695 (L2Z44_18695) trmD 3893330..3894070 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  L2Z44_RS18700 (L2Z44_18700) rplS 3894278..3894646 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  L2Z44_RS18705 (L2Z44_18705) - 3894699..3895640 (-) 942 WP_102891624.1 triacylglycerol lipase -
  L2Z44_RS18710 (L2Z44_18710) - 3895755..3896786 (-) 1032 WP_075399892.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17547.78 Da        Isoelectric Point: 8.4834

>NTDB_id=649298 L2Z44_RS18675 WP_001046419.1 3891414..3891896(+) (pilY2) [Acinetobacter baumannii strain DSM30011-VUB]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=649298 L2Z44_RS18675 WP_001046419.1 3891414..3891896(+) (pilY2) [Acinetobacter baumannii strain DSM30011-VUB]
ATGAATAAGTACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

39.535

100

0.425