Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHR86_RS08725 Genome accession   NZ_CP107919
Coordinates   1967418..1968101 (+) Length   227 a.a.
NCBI ID   WP_328900040.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00441     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1962418..1973101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHR86_RS08705 (OHR86_08715) - 1963220..1963600 (-) 381 WP_328900036.1 peptidase inhibitor family I36 protein -
  OHR86_RS08710 (OHR86_08720) - 1963914..1965125 (+) 1212 WP_328900037.1 alpha/beta hydrolase -
  OHR86_RS08715 (OHR86_08725) - 1965213..1966151 (+) 939 WP_328900038.1 DUF4429 domain-containing protein -
  OHR86_RS08720 (OHR86_08730) - 1966175..1967404 (+) 1230 WP_328900039.1 sensor histidine kinase -
  OHR86_RS08725 (OHR86_08735) vraR 1967418..1968101 (+) 684 WP_328900040.1 response regulator transcription factor Regulator
  OHR86_RS08730 (OHR86_08740) - 1968251..1969297 (+) 1047 WP_328900041.1 alpha/beta hydrolase -
  OHR86_RS08735 (OHR86_08745) - 1969316..1969762 (-) 447 WP_328900042.1 VOC family protein -
  OHR86_RS08740 (OHR86_08750) - 1969809..1970825 (-) 1017 WP_328900043.1 aldo/keto reductase -
  OHR86_RS08745 (OHR86_08755) - 1970825..1971286 (-) 462 WP_328900044.1 MerR family transcriptional regulator -
  OHR86_RS08750 (OHR86_08760) - 1971378..1972217 (+) 840 WP_328900045.1 serine hydrolase domain-containing protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 23875.78 Da        Isoelectric Point: 5.7500

>NTDB_id=649299 OHR86_RS08725 WP_328900040.1 1967418..1968101(+) (vraR) [Streptomyces sp. NBC_00441]
MPIRVIIVDDQAMVRAGFAALLAAQADIDVVGEAPDGRQGVEVSRRVHPDVVLMDVRMPEMDGLAAARALLEPPPGVVHV
PRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAKQGPSAAARGGAALRLN
GLTPRETEVLELIARGLSNQEIAGKLVLAEQTVKTHIGRVLAKLSLRDRAQAVIFAYEAGLVVPGSA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=649299 OHR86_RS08725 WP_328900040.1 1967418..1968101(+) (vraR) [Streptomyces sp. NBC_00441]
GTGCCCATCCGTGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCGGGTTTCGCGGCCCTGCTGGCGGCGCAGGCGGA
CATCGACGTGGTCGGTGAGGCGCCGGACGGGCGCCAGGGCGTCGAGGTCAGCCGCCGGGTCCACCCGGACGTGGTCCTGA
TGGACGTCCGGATGCCCGAGATGGACGGCCTCGCGGCGGCCCGCGCACTGCTGGAACCGCCACCGGGCGTGGTCCATGTG
CCCAGGGTGCTGATGCTGACCACGTTCGACGTGGACGACTACGTGTACGAGGCGCTGCGGGCCGGGGCGTCCGGCTTCCT
GCTGAAGGACGCGCCTCCGGCCGACCTGATCGCGGCGGTCCGGGTGGTGGCGGCGGGCGACGCGCTGCTCGCGCCGTCCG
TGACGCGCCGTCTGATCGCCGACTTCGCGAAGCAGGGGCCGTCTGCGGCGGCCCGGGGCGGGGCGGCACTGCGGCTCAAC
GGGCTGACGCCACGCGAGACGGAGGTCCTGGAACTCATCGCGCGCGGCCTGTCGAACCAGGAGATCGCCGGGAAGCTGGT
GCTCGCCGAGCAGACGGTGAAGACGCACATCGGGCGTGTCCTGGCGAAGCTGTCCCTCCGGGACCGGGCGCAGGCGGTGA
TCTTCGCGTACGAGGCGGGGCTCGTCGTCCCCGGCTCCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(162-216)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.739

97.797

0.379
  degU Bacillus subtilis subsp. subtilis str. 168

37.885

100

0.379