Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2Z44_RS18665 Genome accession   NZ_CP091333
Coordinates   3886717..3887535 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3881717..3892535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS18630 (L2Z44_18630) - 3882299..3882429 (-) 131 Protein_3633 hypothetical protein -
  L2Z44_RS18635 (L2Z44_18635) rpoZ 3882468..3882746 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z44_RS18640 (L2Z44_18640) gmk 3882819..3883448 (-) 630 WP_000015937.1 guanylate kinase -
  L2Z44_RS18645 (L2Z44_18645) ispH 3883571..3884521 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z44_RS18650 (L2Z44_18650) fimU 3884691..3885164 (+) 474 WP_075399888.1 GspH/FimT family pseudopilin Machinery gene
  L2Z44_RS18655 (L2Z44_18655) pilV 3885158..3885718 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L2Z44_RS18660 (L2Z44_18660) pilW 3885719..3886720 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  L2Z44_RS18665 (L2Z44_18665) pilX 3886717..3887535 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z44_RS18670 (L2Z44_18670) pilY1 3887547..3891401 (+) 3855 WP_075399889.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z44_RS18675 (L2Z44_18675) pilY2 3891414..3891896 (+) 483 WP_001046419.1 type IV pilin protein Machinery gene
  L2Z44_RS18680 (L2Z44_18680) pilE 3891893..3892318 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=649296 L2Z44_RS18665 WP_000149374.1 3886717..3887535(+) (pilX) [Acinetobacter baumannii strain DSM30011-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=649296 L2Z44_RS18665 WP_000149374.1 3886717..3887535(+) (pilX) [Acinetobacter baumannii strain DSM30011-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGTTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993