Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   L2Z44_RS18650 Genome accession   NZ_CP091333
Coordinates   3884691..3885164 (+) Length   157 a.a.
NCBI ID   WP_075399888.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3879691..3890164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS18625 (L2Z44_18625) - 3880154..3882259 (-) 2106 WP_001117590.1 HD domain-containing protein -
  L2Z44_RS18630 (L2Z44_18630) - 3882299..3882429 (-) 131 Protein_3633 hypothetical protein -
  L2Z44_RS18635 (L2Z44_18635) rpoZ 3882468..3882746 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z44_RS18640 (L2Z44_18640) gmk 3882819..3883448 (-) 630 WP_000015937.1 guanylate kinase -
  L2Z44_RS18645 (L2Z44_18645) ispH 3883571..3884521 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z44_RS18650 (L2Z44_18650) fimU 3884691..3885164 (+) 474 WP_075399888.1 GspH/FimT family pseudopilin Machinery gene
  L2Z44_RS18655 (L2Z44_18655) pilV 3885158..3885718 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L2Z44_RS18660 (L2Z44_18660) pilW 3885719..3886720 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  L2Z44_RS18665 (L2Z44_18665) pilX 3886717..3887535 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16867.52 Da        Isoelectric Point: 8.5355

>NTDB_id=649293 L2Z44_RS18650 WP_075399888.1 3884691..3885164(+) (fimU) [Acinetobacter baumannii strain DSM30011-VUB]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDMLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=649293 L2Z44_RS18650 WP_075399888.1 3884691..3885164(+) (fimU) [Acinetobacter baumannii strain DSM30011-VUB]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATATGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994