Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHR86_RS05745 Genome accession   NZ_CP107919
Coordinates   1319489..1320133 (-) Length   214 a.a.
NCBI ID   WP_328899534.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00441     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1314489..1325133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHR86_RS05715 (OHR86_05720) - 1314495..1315262 (-) 768 WP_328899529.1 sulfite exporter TauE/SafE family protein -
  OHR86_RS05720 (OHR86_05725) - 1315325..1316254 (-) 930 WP_328899530.1 SPFH domain-containing protein -
  OHR86_RS05725 (OHR86_05730) - 1316329..1316760 (-) 432 WP_328899531.1 NfeD family protein -
  OHR86_RS05730 (OHR86_05735) - 1316820..1317647 (-) 828 WP_328899532.1 hypothetical protein -
  OHR86_RS05735 (OHR86_05740) - 1317699..1318496 (-) 798 WP_018104738.1 ABC transporter ATP-binding protein -
  OHR86_RS05740 (OHR86_05745) - 1318651..1319430 (+) 780 WP_328899533.1 hypothetical protein -
  OHR86_RS05745 (OHR86_05750) vraR 1319489..1320133 (-) 645 WP_328899534.1 response regulator transcription factor Regulator
  OHR86_RS05750 (OHR86_05755) - 1320126..1321271 (-) 1146 WP_328899535.1 GAF domain-containing sensor histidine kinase -
  OHR86_RS05755 (OHR86_05760) - 1321714..1322472 (+) 759 WP_328899536.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23137.42 Da        Isoelectric Point: 5.3843

>NTDB_id=649293 OHR86_RS05745 WP_328899534.1 1319489..1320133(-) (vraR) [Streptomyces sp. NBC_00441]
MADRIIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEAADGAEGVARTEELRPDVVLMDIKMPGTDGIEALRRLRELENPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLSQDEPGTGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=649293 OHR86_RS05745 WP_328899534.1 1319489..1320133(-) (vraR) [Streptomyces sp. NBC_00441]
GTGGCTGACAGGATCATCAGGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGCGGCCTGCGCACGTTCCTGGAGAT
CCAGGACGACATCGAGGTCGTCGGCGAGGCGGCCGACGGCGCCGAGGGCGTGGCCAGGACGGAGGAGCTGCGGCCCGATG
TCGTACTGATGGACATCAAGATGCCCGGCACCGACGGCATCGAGGCGCTGCGCCGCCTCCGCGAGCTGGAGAACCCGGCC
AAGGTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTCGTCCCCGCCCTGCGCGCGGGCGCCTCCGGTTACGTATA
CAAGGACGTCGACCCGGACGCCCTGGCCGGCGCCATCCGCTCCGTGCACGCCGGGCATGTCCTGCTCCAGCCCGAGGTGG
CCGGGGCGCTCCTCTCCCAGGACGAGCCGGGCACGGGCACCGGCCGGGGGAGCACCCTCACCGAACGCGAGCGGGAAGTG
CTCGGCCTGATCGCCGACGGCCGGTCCAACCGCGAGATCGCGCGGGCCCTGGTCCTGTCCGAGAAGACGGTCAAGACCCA
CGTCTCGAACATCCTCATGAAGCTCGACCTGGCCGACCGCACCCAGGCGGCGCTCTGGGCGGTCCGCCACGGAGCGGCGG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.146

96.262

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407