Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   H020_RS0104855 Genome accession   NZ_AKVY01000001
Coordinates   925489..926442 (+) Length   317 a.a.
NCBI ID   WP_000495909.1    Uniprot ID   A0A0H2UPP6
Organism   Streptococcus pneumoniae TIGR4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 920489..931442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H020_RS11825 rpmG 921232..921381 (+) 150 WP_001809104.1 50S ribosomal protein L33 -
  H020_RS0104835 secG 921421..921654 (+) 234 WP_000282517.1 preprotein translocase subunit SecG -
  H020_RS0104840 rnr 921756..924110 (+) 2355 WP_000654907.1 ribonuclease R -
  H020_RS0104845 smpB 924073..924540 (+) 468 WP_001051747.1 SsrA-binding protein SmpB -
  H020_RS0104850 tehB 924556..925416 (+) 861 WP_000413762.1 SAM-dependent methyltransferase TehB -
  H020_RS0104855 coiA 925489..926442 (+) 954 WP_000495909.1 competence protein CoiA Machinery gene
  H020_RS0104860 pepF 926461..928263 (+) 1803 WP_000244116.1 oligoendopeptidase F Regulator
  H020_RS0104865 - 928265..928978 (+) 714 WP_000230399.1 O-methyltransferase -
  H020_RS0104870 prsA 929045..929986 (+) 942 WP_000727952.1 peptidylprolyl isomerase PrsA -
  H020_RS0104875 - 930104..930445 (-) 342 Protein_923 transposase -
  H020_RS13430 - 930858..930953 (+) 96 Protein_924 IS630 family transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38243.86 Da        Isoelectric Point: 8.9865

>NTDB_id=64928 H020_RS0104855 WP_000495909.1 925489..926442(+) (coiA) [Streptococcus pneumoniae TIGR4]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQLHLRQGPSVRTHFAHKSLKDCDFFFENESPEHLANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYQHFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=64928 H020_RS0104855 WP_000495909.1 925489..926442(+) (coiA) [Streptococcus pneumoniae TIGR4]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGCTCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACCTGGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGCTATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTTTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCAGCACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UPP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

100

100

1
  coiA Streptococcus pneumoniae Rx1

99.369

100

0.994
  coiA Streptococcus pneumoniae D39

99.369

100

0.994
  coiA Streptococcus pneumoniae R6

99.369

100

0.994
  coiA Streptococcus mitis NCTC 12261

89.274

100

0.893
  coiA Lactococcus lactis subsp. cremoris KW2

42.593

100

0.435

Multiple sequence alignment