Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   L3X25_RS05225 Genome accession   NZ_CP091310
Coordinates   1018633..1019808 (-) Length   391 a.a.
NCBI ID   WP_002842963.1    Uniprot ID   -
Organism   Campylobacter coli strain M8     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1013633..1024808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3X25_RS05195 (L3X25_05195) - 1014174..1014515 (+) 342 WP_057993651.1 hypothetical protein -
  L3X25_RS05200 (L3X25_05200) flgM 1014578..1014775 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  L3X25_RS05205 (L3X25_05205) - 1014818..1015252 (+) 435 WP_002779263.1 flagellar protein FlgN -
  L3X25_RS05210 (L3X25_05210) flgK 1015262..1017088 (+) 1827 WP_052777152.1 flagellar hook-associated protein FlgK -
  L3X25_RS05215 (L3X25_05215) - 1017105..1017869 (+) 765 WP_002781156.1 TIGR02757 family protein -
  L3X25_RS05220 (L3X25_05220) - 1017872..1018636 (+) 765 WP_002781157.1 TSUP family transporter -
  L3X25_RS05225 (L3X25_05225) ctsF 1018633..1019808 (-) 1176 WP_002842963.1 type II secretion system F family protein Machinery gene
  L3X25_RS05230 (L3X25_05230) ctsE 1019795..1021357 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  L3X25_RS05235 (L3X25_05235) - 1021350..1021946 (-) 597 WP_002779313.1 CDC27 family protein -
  L3X25_RS05240 (L3X25_05240) ctsP 1021943..1022539 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  L3X25_RS05245 (L3X25_05245) ctsD 1022532..1023950 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  L3X25_RS05250 (L3X25_05250) ctsR 1023928..1024239 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45517.41 Da        Isoelectric Point: 9.6163

>NTDB_id=649083 L3X25_RS05225 WP_002842963.1 1018633..1019808(-) (ctsF) [Campylobacter coli strain M8]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQKIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=649083 L3X25_RS05225 WP_002842963.1 1018633..1019808(-) (ctsF) [Campylobacter coli strain M8]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGACTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGTGATAGCTTG
CTTTTAAAACTCCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAAAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(262-381)

Type II secretion system (T2SS), protein F (T2SSF)

(59-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

60.914

100

0.614